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new glfw

Former-commit-id: 3290396e0ab097a03e1b15c8c7ab4a851cad7ade
Olga Diamanti 10 anni fa
parent
commit
2cdad8448c

+ 5 - 4
include/igl/bounding_box.cpp

@@ -1,9 +1,9 @@
 // This file is part of libigl, a simple c++ geometry processing library.
-// 
+//
 // Copyright (C) 2014 Alec Jacobson <alecjacobson@gmail.com>
-// 
-// This Source Code Form is subject to the terms of the Mozilla Public License 
-// v. 2.0. If a copy of the MPL was not distributed with this file, You can 
+//
+// This Source Code Form is subject to the terms of the Mozilla Public License
+// v. 2.0. If a copy of the MPL was not distributed with this file, You can
 // obtain one at http://mozilla.org/MPL/2.0/.
 #include "bounding_box.h"
 #include <iostream>
@@ -82,4 +82,5 @@ IGL_INLINE void igl::bounding_box(
 
 #ifdef IGL_STATIC_LIBRARY
 // Explicit template specialization
+template void igl::bounding_box<Eigen::Matrix<double, -1, 3, 0, -1, 3>, Eigen::Matrix<double, -1, 3, 0, -1, 3>, Eigen::Matrix<int, -1, 3, 0, -1, 3> >(Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 3, 0, -1, 3> > const&, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 3, 0, -1, 3> >&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 3, 0, -1, 3> >&);
 #endif

+ 0 - 2296
include/igl/comiso/miq.cpp

@@ -1,2296 +0,0 @@
-// This file is part of libigl, a simple c++ geometry processing library.
-//
-// Copyright (C) 2014 Daniele Panozzo <daniele.panozzo@gmail.com>, Olga Diamanti <olga.diam@gmail.com>
-//
-// This Source Code Form is subject to the terms of the Mozilla Public License
-// v. 2.0. If a copy of the MPL was not distributed with this file, You can
-// obtain one at http://mozilla.org/MPL/2.0/.
-
-#include <igl/comiso/miq.h>
-#include <igl/local_basis.h>
-#include <igl/triangle_triangle_adjacency.h>
-
-// includes for VertexIndexing
-#include <igl/HalfEdgeIterator.h>
-#include <igl/is_border_vertex.h>
-#include <igl/vertex_triangle_adjacency.h>
-
-
-// includes for poissonSolver
-#include <gmm/gmm.h>
-#include <CoMISo/Solver/ConstrainedSolver.hh>
-#include <CoMISo/Solver/MISolver.hh>
-#include <CoMISo/Solver/GMM_Tools.hh>
-#include <igl/doublearea.h>
-#include <igl/per_face_normals.h>
-
-//
-#include <igl/cross_field_missmatch.h>
-#include <igl/comb_frame_field.h>
-#include <igl/comb_cross_field.h>
-#include <igl/cut_mesh_from_singularities.h>
-#include <igl/find_cross_field_singularities.h>
-#include <igl/compute_frame_field_bisectors.h>
-#include <igl/rotate_vectors.h>
-
-#define DEBUGPRINT 0
-
-
-namespace igl {
-
-  class SparseMatrixData{
-  protected:
-    unsigned int m_nrows;
-    unsigned int m_ncols;
-    std::vector<unsigned int> m_rowind;
-    std::vector<unsigned int> m_colind;
-    std::vector<double>       m_vals;
-
-  public:
-    unsigned int   nrows()    { return m_nrows      ; }
-    unsigned int   ncols()    { return m_ncols      ; }
-    unsigned int   nentries() { return m_vals.size(); }
-    std::vector<unsigned int>&  rowind()   { return m_rowind     ; }
-    std::vector<unsigned int>&  colind()   { return m_colind     ; }
-    std::vector<double>&        vals()     { return m_vals       ; }
-
-    // create an empty matrix with a fixed number of rows
-    IGL_INLINE SparseMatrixData()
-    {
-      initialize(0,0);
-    }
-
-    // create an empty matrix with a fixed number of rows
-    IGL_INLINE void initialize(int nr, int nc) {
-      assert(nr >= 0 && nc >=0);
-      m_nrows = nr;
-      m_ncols = nc;
-
-      m_rowind.resize(0);
-      m_colind.resize(0);
-      m_vals.resize(0);
-    }
-
-    // add a nonzero entry to the matrix
-    // no checks are done for coinciding entries
-    // the interpretation of the repeated entries (replace or add)
-    // depends on how the actual sparse matrix datastructure is constructed
-
-    IGL_INLINE void addEntryCmplx(unsigned int i, unsigned int j, std::complex<double> val) {
-      m_rowind.push_back(2*i);   m_colind.push_back(2*j);   m_vals.push_back( val.real());
-      m_rowind.push_back(2*i);   m_colind.push_back(2*j+1); m_vals.push_back(-val.imag());
-      m_rowind.push_back(2*i+1); m_colind.push_back(2*j);   m_vals.push_back( val.imag());
-      m_rowind.push_back(2*i+1); m_colind.push_back(2*j+1); m_vals.push_back( val.real());
-    }
-
-    IGL_INLINE void addEntryReal(unsigned int i, unsigned int j, double val) {
-      m_rowind.push_back(i);   m_colind.push_back(j);   m_vals.push_back(val);
-    }
-
-    IGL_INLINE virtual ~SparseMatrixData() {
-    }
-
-  };
-
-  // a small class to manage storage for matrix data
-  // not using stl vectors: want to make all memory management
-  // explicit to avoid hidden automatic reallocation
-  // TODO: redo with STL vectors but with explicit mem. management
-
-  class SparseSystemData {
-  private:
-    // matrix representation,  A[rowind[i],colind[i]] = vals[i]
-    // right-hand side
-    SparseMatrixData m_A;
-    double       *m_b;
-    double       *m_x;
-
-  public:
-    IGL_INLINE SparseMatrixData& A() { return m_A; }
-    IGL_INLINE double*        b()        { return m_b       ; }
-    IGL_INLINE double*        x()        { return m_x       ; }
-    IGL_INLINE unsigned int   nrows()    { return  m_A.nrows(); }
-
-  public:
-
-    IGL_INLINE SparseSystemData(): m_A(), m_b(NULL), m_x(NULL){ }
-
-    IGL_INLINE void initialize(unsigned int nr, unsigned int nc) {
-      m_A.initialize(nr,nc);
-      m_b      = new          double[nr];
-      m_x      = new          double[nr];
-      assert(m_b);
-      std::fill( m_b,  m_b+nr, 0.);
-    }
-
-    IGL_INLINE void addRHSCmplx(unsigned int i, std::complex<double> val) {
-      assert( 2*i+1 < m_A.nrows());
-      m_b[2*i] += val.real(); m_b[2*i+1] += val.imag();
-    }
-
-    IGL_INLINE void setRHSCmplx(unsigned int i, std::complex<double> val) {
-      assert( 2*i+1 < m_A.nrows());
-      m_b[2*i] = val.real(); m_b[2*i+1] = val.imag();
-    }
-
-    IGL_INLINE std::complex<double> getRHSCmplx(unsigned int i) {
-      assert( 2*i+1 < m_A.nrows());
-      return std::complex<double>( m_b[2*i], m_b[2*i+1]);
-    }
-
-    IGL_INLINE double getRHSReal(unsigned int i) {
-      assert( i < m_A.nrows());
-      return m_b[i];
-    }
-
-    IGL_INLINE std::complex<double> getXCmplx(unsigned int i) {
-      assert( 2*i+1 < m_A.nrows());
-      return std::complex<double>( m_x[2*i], m_x[2*i+1]);
-    }
-
-    IGL_INLINE void cleanMem() {
-      //m_A.cleanup();
-      delete [] m_b;
-      delete [] m_x;
-    }
-
-    IGL_INLINE virtual ~SparseSystemData() {
-      delete [] m_b;
-      delete [] m_x;
-    }
-  };
-
-  struct SeamInfo
-  {
-    int v0,v0p,v1,v1p;
-    int integerVar;
-    unsigned char MMatch;
-
-    IGL_INLINE SeamInfo(int _v0,
-             int _v1,
-             int _v0p,
-             int _v1p,
-             int _MMatch,
-             int _integerVar);
-
-    IGL_INLINE SeamInfo(const SeamInfo &S1);
-  };
-
-  struct MeshSystemInfo
-  {
-    ///total number of scalar variables
-    int num_scalar_variables;
-    ////number of vertices variables
-    int num_vert_variables;
-    ///num of integer for cuts
-    int num_integer_cuts;
-    ///this are used for drawing purposes
-    std::vector<SeamInfo> EdgeSeamInfo;
-#if 0
-    ///this are values of integer variables after optimization
-    std::vector<int> IntegerValues;
-#endif
-  };
-
-
-  template <typename DerivedV, typename DerivedF>
-  class VertexIndexing
-  {
-  public:
-    // Input:
-    const Eigen::PlainObjectBase<DerivedV> &V;
-    const Eigen::PlainObjectBase<DerivedF> &F;
-    const Eigen::PlainObjectBase<DerivedF> &TT;
-    const Eigen::PlainObjectBase<DerivedF> &TTi;
-    // const Eigen::PlainObjectBase<DerivedV> &PD1;
-    // const Eigen::PlainObjectBase<DerivedV> &PD2;
-
-    const Eigen::Matrix<int, Eigen::Dynamic, 3> &Handle_MMatch;
-    // const Eigen::Matrix<int, Eigen::Dynamic, 1> &Handle_Singular; // bool
-    // const Eigen::Matrix<int, Eigen::Dynamic, 1> &Handle_SingularDegree; // vertex;
-    const Eigen::Matrix<int, Eigen::Dynamic, 3> &Handle_Seams; // 3 bool
-
-
-    ///this handle for mesh TODO: move with the other global variables
-    MeshSystemInfo Handle_SystemInfo;
-
-    // Output:
-    ///this maps the integer for edge - face
-    Eigen::MatrixXi Handle_Integer; // TODO: remove it is useless
-
-    ///per face indexes of vertex in the solver
-    Eigen::MatrixXi HandleS_Index;
-
-    ///per vertex variable indexes
-    std::vector<std::vector<int> > HandleV_Integer;
-
-    // internal
-    std::vector<std::vector<int> > VF, VFi;
-    std::vector<bool> V_border; // bool
-
-    IGL_INLINE VertexIndexing(const Eigen::PlainObjectBase<DerivedV> &_V,
-                   const Eigen::PlainObjectBase<DerivedF> &_F,
-                   const Eigen::PlainObjectBase<DerivedF> &_TT,
-                   const Eigen::PlainObjectBase<DerivedF> &_TTi,
-                  //  const Eigen::PlainObjectBase<DerivedV> &_PD1,
-                  //  const Eigen::PlainObjectBase<DerivedV> &_PD2,
-                   const Eigen::Matrix<int, Eigen::Dynamic, 3> &_Handle_MMatch,
-                  //  const Eigen::Matrix<int, Eigen::Dynamic, 1> &_Handle_Singular,
-                  //  const Eigen::Matrix<int, Eigen::Dynamic, 1> &_Handle_SingularDegree,
-                   const Eigen::Matrix<int, Eigen::Dynamic, 3> &_Handle_Seams
-                   );
-
-    ///vertex to variable mapping
-    IGL_INLINE void InitMapping();
-
-    IGL_INLINE void InitFaceIntegerVal();
-
-    IGL_INLINE void InitSeamInfo();
-
-
-  private:
-    ///this maps back index to vertices
-    std::vector<int> IndexToVert; // TODO remove it is useless
-
-    ///this is used for drawing purposes
-    std::vector<int> duplicated; // TODO remove it is useless
-
-    IGL_INLINE void FirstPos(const int v, int &f, int &edge);
-
-    IGL_INLINE int AddNewIndex(const int v0);
-
-    IGL_INLINE bool HasIndex(int indexVert,int indexVar);
-
-    IGL_INLINE void GetSeamInfo(const int f0,
-                     const int f1,
-                     const int indexE,
-                     int &v0,int &v1,
-                     int &v0p,int &v1p,
-                     unsigned char &_MMatch,
-                     int &integerVar);
-    IGL_INLINE bool IsSeam(const int f0, const int f1);
-
-    ///find initial position of the pos to
-    // assing face to vert inxex correctly
-    IGL_INLINE void FindInitialPos(const int vert, int &edge, int &face);
-
-
-    ///intialize the mapping given an initial pos
-    ///whih must be initialized with FindInitialPos
-    IGL_INLINE void MapIndexes(const int  vert, const int edge_init, const int f_init);
-
-    ///intialize the mapping for a given vertex
-    IGL_INLINE void InitMappingSeam(const int vert);
-
-    ///intialize the mapping for a given sampled mesh
-    IGL_INLINE void InitMappingSeam();
-
-    ///test consistency of face variables per vert mapping
-    IGL_INLINE void TestSeamMappingFace(const int f);
-
-    ///test consistency of face variables per vert mapping
-    IGL_INLINE void TestSeamMappingVertex(int indexVert);
-
-    ///check consistency of variable mapping across seams
-    IGL_INLINE void TestSeamMapping();
-
-  };
-
-
-  template <typename DerivedV, typename DerivedF>
-  class PoissonSolver
-  {
-
-  public:
-    IGL_INLINE void SolvePoisson(Eigen::VectorXd Stiffness,
-                      double vector_field_scale=0.1f,
-                      double grid_res=1.f,
-                      bool direct_round=true,
-                      int localIter=0,
-                      bool _integer_rounding=true,
-                      bool _singularity_rounding=true,
-                      std::vector<int> roundVertices = std::vector<int>(),
-                      std::vector<std::vector<int> > hardFeatures = std::vector<std::vector<int> >());
-
-    IGL_INLINE PoissonSolver(const Eigen::PlainObjectBase<DerivedV> &_V,
-                  const Eigen::PlainObjectBase<DerivedF> &_F,
-                  const Eigen::PlainObjectBase<DerivedF> &_TT,
-                  const Eigen::PlainObjectBase<DerivedF> &_TTi,
-                  const Eigen::PlainObjectBase<DerivedV> &_PD1,
-                  const Eigen::PlainObjectBase<DerivedV> &_PD2,
-                  const Eigen::MatrixXi &_HandleS_Index,
-                  const Eigen::Matrix<int, Eigen::Dynamic, 1>&_Handle_Singular,
-                  const MeshSystemInfo &_Handle_SystemInfo
-                  );
-
-    const Eigen::PlainObjectBase<DerivedV> &V;
-    const Eigen::PlainObjectBase<DerivedF> &F;
-    const Eigen::PlainObjectBase<DerivedF> &TT;
-    const Eigen::PlainObjectBase<DerivedF> &TTi;
-    const Eigen::PlainObjectBase<DerivedV> &PD1;
-    const Eigen::PlainObjectBase<DerivedV> &PD2;
-    const Eigen::Matrix<int, Eigen::Dynamic, 1> &Handle_Singular; // bool
-    const Eigen::MatrixXi &HandleS_Index; //todo
-
-    const MeshSystemInfo &Handle_SystemInfo;
-
-    // Internal:
-    Eigen::MatrixXd doublearea;
-    Eigen::VectorXd Handle_Stiffness;
-    Eigen::PlainObjectBase<DerivedV> N;
-    std::vector<std::vector<int> > VF;
-    std::vector<std::vector<int> > VFi;
-    Eigen::MatrixXd UV; // this is probably useless
-
-    // Output:
-    // per wedge UV coordinates, 6 coordinates (1 face) per row
-    Eigen::MatrixXd WUV;
-
-    ///solver data
-    SparseSystemData S;
-
-    ///vector of unknowns
-    std::vector< double > X;
-
-    ////REAL PART
-    ///number of fixed vertex
-    unsigned int n_fixed_vars;
-
-    ///the number of REAL variables for vertices
-    unsigned int n_vert_vars;
-
-    ///total number of variables of the system,
-    ///do not consider constraints, but consider integer vars
-    unsigned int num_total_vars;
-
-    //////INTEGER PART
-    ///the total number of integer variables
-    unsigned int n_integer_vars;
-
-    ///CONSTRAINT PART
-    ///number of cuts constraints
-    unsigned int num_cut_constraint;
-
-    // number of user-defined constraints
-    unsigned int num_userdefined_constraint;
-
-    ///total number of constraints equations
-    unsigned int num_constraint_equations;
-
-    ///total size of the system including constraints
-    unsigned int system_size;
-
-    ///if you intend to make integer rotation
-    ///and translations
-    bool integer_jumps_bary;
-
-    ///vector of blocked vertices
-    std::vector<int> Hard_constraints;
-
-    ///vector of indexes to round
-    std::vector<int> ids_to_round;
-
-    ///vector of indexes to round
-    std::vector<std::vector<int > > userdefined_constraints;
-
-    ///boolean that is true if rounding to integer is needed
-    bool integer_rounding;
-
-    ///START SYSTEM ACCESS METHODS
-    ///add an entry to the LHS
-    IGL_INLINE void AddValA(int Xindex,
-                 int Yindex,
-                 double val);
-
-    ///add a complex entry to the LHS
-    IGL_INLINE void AddComplexA(int VarXindex,
-                     int VarYindex,
-                     std::complex<double> val);
-
-    ///add a velue to the RHS
-    IGL_INLINE void AddValB(int Xindex,
-                 double val);
-
-    ///add the area term, scalefactor is used to sum up
-    ///and normalize on the overlap zones
-    IGL_INLINE void AddAreaTerm(int index[3][3][2],double ScaleFactor);
-
-    ///set the diagonal of the matrix (which is zero at the beginning)
-    ///such that the sum of a row or a colums is zero
-    IGL_INLINE void SetDiagonal(double val[3][3]);
-
-    ///given a vector of scalar values and
-    ///a vector of indexes add such values
-    ///as specified by the indexes
-    IGL_INLINE void AddRHS(double b[6],
-                int index[3]);
-
-    ///add a 3x3 block matrix to the system matrix...
-    ///indexes are specified in the 3x3 matrix of x,y pairs
-    ///indexes must be multiplied by 2 cause u and v
-    IGL_INLINE void Add33Block(double val[3][3], int index[3][3][2]);
-
-    ///add a 3x3 block matrix to the system matrix...
-    ///indexes are specified in the 3x3 matrix of x,y pairs
-    ///indexes must be multiplied by 2 cause u and v
-    IGL_INLINE void Add44Block(double val[4][4],int index[4][4][2]);
-    ///END SYSTEM ACCESS METHODS
-
-    ///START COMMON MATH FUNCTIONS
-    ///return the complex encoding the rotation
-    ///for a given missmatch interval
-    IGL_INLINE std::complex<double> GetRotationComplex(int interval);
-    ///END COMMON MATH FUNCTIONS
-
-
-    ///START ENERGY MINIMIZATION PART
-    ///initialize the LHS for a given face
-    ///for minimization of Dirichlet's energy
-    IGL_INLINE void perElementLHS(int f,
-                       double val[3][3],
-                       int index[3][3][2]);
-
-    ///initialize the RHS for a given face
-    ///for minimization of Dirichlet's energy
-    IGL_INLINE void perElementRHS(int f,
-                       double b[6],
-                       double vector_field_scale=1);
-
-    ///evaluate the LHS and RHS for a single face
-    ///for minimization of Dirichlet's energy
-    IGL_INLINE void PerElementSystemReal(int f,
-                              double val[3][3],
-                              int index[3][3][2],
-                              double b[6],
-                              double vector_field_scale=1.0);
-    ///END ENERGY MINIMIZATION PART
-
-    ///START FIXING VERTICES
-    ///set a given vertex as fixed
-    IGL_INLINE void AddFixedVertex(int v);
-
-    ///find vertex to fix in case we're using
-    ///a vector field NB: multiple components not handled
-    IGL_INLINE void FindFixedVertField();
-
-    ///find hard constraint depending if using or not
-    ///a vector field
-    IGL_INLINE void FindFixedVert();
-
-    IGL_INLINE int GetFirstVertexIndex(int v);
-
-    ///fix the vertices which are flagged as fixed
-    IGL_INLINE void FixBlockedVertex();
-    ///END FIXING VERTICES
-
-    ///HANDLING SINGULARITY
-    //set the singularity round to integer location
-    IGL_INLINE void AddSingularityRound();
-
-    IGL_INLINE void AddToRoundVertices(std::vector<int> ids);
-
-    ///START GENERIC SYSTEM FUNCTIONS
-    //build the laplacian matrix cyclyng over all rangemaps
-    //and over all faces
-    IGL_INLINE void BuildLaplacianMatrix(double vfscale=1);
-
-    ///find different sized of the system
-    IGL_INLINE void FindSizes();
-
-    IGL_INLINE void AllocateSystem();
-
-    ///intitialize the whole matrix
-    IGL_INLINE void InitMatrix();
-
-    ///map back coordinates after that
-    ///the system has been solved
-    IGL_INLINE void MapCoords();
-    ///END GENERIC SYSTEM FUNCTIONS
-
-    ///set the constraints for the inter-range cuts
-    IGL_INLINE void BuildSeamConstraintsExplicitTranslation();
-
-    ///set the constraints for the inter-range cuts
-    IGL_INLINE void BuildUserDefinedConstraints();
-
-    ///call of the mixed integer solver
-    IGL_INLINE void MixedIntegerSolve(double cone_grid_res=1,
-                           bool direct_round=true,
-                           int localIter=0);
-
-    IGL_INLINE void clearUserConstraint();
-
-    IGL_INLINE void addSharpEdgeConstraint(int fid, int vid);
-
-  };
-
-  template <typename DerivedV, typename DerivedF, typename DerivedU>
-  class MIQ_class
-  {
-  private:
-    const Eigen::PlainObjectBase<DerivedV> &V;
-    const Eigen::PlainObjectBase<DerivedF> &F;
-    Eigen::MatrixXd WUV;
-    // internal
-    Eigen::PlainObjectBase<DerivedF> TT;
-    Eigen::PlainObjectBase<DerivedF> TTi;
-
-    // Stiffness per face
-    Eigen::VectorXd Handle_Stiffness;
-    Eigen::PlainObjectBase<DerivedV> B1, B2, B3;
-
-  public:
-    IGL_INLINE MIQ_class(const Eigen::PlainObjectBase<DerivedV> &V_,
-              const Eigen::PlainObjectBase<DerivedF> &F_,
-              const Eigen::PlainObjectBase<DerivedV> &PD1_combed,
-              const Eigen::PlainObjectBase<DerivedV> &PD2_combed,
-              // const Eigen::PlainObjectBase<DerivedV> &BIS1_combed,
-              // const Eigen::PlainObjectBase<DerivedV> &BIS2_combed,
-              const Eigen::Matrix<int, Eigen::Dynamic, 3> &Handle_MMatch,
-              const Eigen::Matrix<int, Eigen::Dynamic, 1> &Handle_Singular,
-              // const Eigen::Matrix<int, Eigen::Dynamic, 1> &Handle_SingularDegree,
-              const Eigen::Matrix<int, Eigen::Dynamic, 3> &Handle_Seams,
-              Eigen::PlainObjectBase<DerivedU> &UV,
-              Eigen::PlainObjectBase<DerivedF> &FUV,
-              double GradientSize = 30.0,
-              double Stiffness = 5.0,
-              bool DirectRound = false,
-              int iter = 5,
-              int localIter = 5,
-              bool DoRound = true,
-              bool SingularityRound=true,
-              std::vector<int> roundVertices = std::vector<int>(),
-              std::vector<std::vector<int> > hardFeatures = std::vector<std::vector<int> >());
-
-
-    IGL_INLINE void extractUV(Eigen::PlainObjectBase<DerivedU> &UV_out,
-                   Eigen::PlainObjectBase<DerivedF> &FUV_out);
-
-  private:
-    IGL_INLINE int NumFlips(const Eigen::MatrixXd& WUV);
-
-    IGL_INLINE double Distortion(int f, double h, const Eigen::MatrixXd& WUV);
-
-    IGL_INLINE double LaplaceDistortion(const int f, double h, const Eigen::MatrixXd& WUV);
-
-    IGL_INLINE bool updateStiffeningJacobianDistorsion(double grad_size, const Eigen::MatrixXd& WUV);
-
-    IGL_INLINE bool IsFlipped(const Eigen::Vector2d &uv0,
-                          const Eigen::Vector2d &uv1,
-                          const Eigen::Vector2d &uv2);
-
-    IGL_INLINE bool IsFlipped(const int i, const Eigen::MatrixXd& WUV);
-
-  };
-};
-
-IGL_INLINE igl::SeamInfo::SeamInfo(int _v0,
-                        int _v1,
-                        int _v0p,
-                        int _v1p,
-                        int _MMatch,
-                        int _integerVar)
-{
-  v0=_v0;
-  v1=_v1;
-  v0p=_v0p;
-  v1p=_v1p;
-  integerVar=_integerVar;
-  MMatch=_MMatch;
-}
-
-IGL_INLINE igl::SeamInfo::SeamInfo(const SeamInfo &S1)
-{
-  v0=S1.v0;
-  v1=S1.v1;
-  v0p=S1.v0p;
-  v1p=S1.v1p;
-  integerVar=S1.integerVar;
-  MMatch=S1.MMatch;
-}
-
-
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE igl::VertexIndexing<DerivedV, DerivedF>::VertexIndexing(const Eigen::PlainObjectBase<DerivedV> &_V,
-                                                        const Eigen::PlainObjectBase<DerivedF> &_F,
-                                                        const Eigen::PlainObjectBase<DerivedF> &_TT,
-                                                        const Eigen::PlainObjectBase<DerivedF> &_TTi,
-                                                        // const Eigen::PlainObjectBase<DerivedV> &_PD1,
-                                                        // const Eigen::PlainObjectBase<DerivedV> &_PD2,
-                                                        const Eigen::Matrix<int, Eigen::Dynamic, 3> &_Handle_MMatch,
-                                                        // const Eigen::Matrix<int, Eigen::Dynamic, 1> &_Handle_Singular,
-                                                        // const Eigen::Matrix<int, Eigen::Dynamic, 1> &_Handle_SingularDegree,
-                                                        const Eigen::Matrix<int, Eigen::Dynamic, 3> &_Handle_Seams
-
-                                                        ):
-V(_V),
-F(_F),
-TT(_TT),
-TTi(_TTi),
-// PD1(_PD1),
-// PD2(_PD2),
-Handle_MMatch(_Handle_MMatch),
-// Handle_Singular(_Handle_Singular),
-// Handle_SingularDegree(_Handle_SingularDegree),
-Handle_Seams(_Handle_Seams)
-{
-
-  V_border = igl::is_border_vertex(V,F);
-  igl::vertex_triangle_adjacency(V,F,VF,VFi);
-
-  IndexToVert.clear();
-
-  Handle_SystemInfo.num_scalar_variables=0;
-  Handle_SystemInfo.num_vert_variables=0;
-  Handle_SystemInfo.num_integer_cuts=0;
-
-  duplicated.clear();
-
-  HandleS_Index = Eigen::MatrixXi::Constant(F.rows(),3,-1);
-
-  Handle_Integer = Eigen::MatrixXi::Constant(F.rows(),3,-1);
-
-  HandleV_Integer.resize(V.rows());
-}
-
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::VertexIndexing<DerivedV, DerivedF>::FirstPos(const int v, int &f, int &edge)
-{
-  f    = VF[v][0];  // f=v->cVFp();
-  edge = VFi[v][0]; // edge=v->cVFi();
-}
-
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE int igl::VertexIndexing<DerivedV, DerivedF>::AddNewIndex(const int v0)
-{
-  Handle_SystemInfo.num_scalar_variables++;
-  HandleV_Integer[v0].push_back(Handle_SystemInfo.num_scalar_variables);
-  IndexToVert.push_back(v0);
-  return Handle_SystemInfo.num_scalar_variables;
-}
-
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE bool igl::VertexIndexing<DerivedV, DerivedF>::HasIndex(int indexVert,int indexVar)
-{
-  for (unsigned int i=0;i<HandleV_Integer[indexVert].size();i++)
-    if (HandleV_Integer[indexVert][i]==indexVar)return true;
-  return false;
-}
-
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::VertexIndexing<DerivedV, DerivedF>::GetSeamInfo(const int f0,
-                                                          const int f1,
-                                                          const int indexE,
-                                                          int &v0,int &v1,
-                                                          int &v0p,int &v1p,
-                                                          unsigned char &_MMatch,
-                                                          int &integerVar)
-{
-  int edgef0 = indexE;
-  v0 = HandleS_Index(f0,edgef0);
-  v1 = HandleS_Index(f0,(edgef0+1)%3);
-  ////get the index on opposite side
-  assert(TT(f0,edgef0) == f1);
-  int edgef1 = TTi(f0,edgef0);
-  v1p = HandleS_Index(f1,edgef1);
-  v0p = HandleS_Index(f1,(edgef1+1)%3);
-
-  integerVar = Handle_Integer(f0,edgef0);
-  _MMatch = Handle_MMatch(f0,edgef0);
-  assert(F(f0,edgef0)         == F(f1,((edgef1+1)%3)));
-  assert(F(f0,((edgef0+1)%3)) == F(f1,edgef1));
-}
-
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE bool igl::VertexIndexing<DerivedV, DerivedF>::IsSeam(const int f0, const int f1)
-{
-  for (int i=0;i<3;i++)
-  {
-    int f_clos = TT(f0,i);
-
-    if (f_clos == -1)
-      continue; ///border
-
-    if (f_clos == f1)
-      return(Handle_Seams(f0,i));
-  }
-  assert(0);
-  return false;
-}
-
-///find initial position of the pos to
-// assing face to vert inxex correctly
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::VertexIndexing<DerivedV, DerivedF>::FindInitialPos(const int vert,
-                                                             int &edge,
-                                                             int &face)
-{
-  int f_init;
-  int edge_init;
-  FirstPos(vert,f_init,edge_init); // todo manually IGL_INLINE the function
-  igl::HalfEdgeIterator<DerivedF> VFI(&F,&TT,&TTi,f_init,edge_init);
-
-  bool vertexB = V_border[vert];
-  bool possible_split=false;
-  bool complete_turn=false;
-  do
-  {
-    int curr_f = VFI.Fi();
-    int curr_edge=VFI.Ei();
-    VFI.NextFE();
-    int next_f=VFI.Fi();
-    ///test if I've just crossed a border
-    bool on_border=(TT(curr_f,curr_edge)==-1);
-    //bool mismatch=false;
-    bool seam=false;
-
-    ///or if I've just crossed a seam
-    ///if I'm on a border I MUST start from the one next t othe border
-    if (!vertexB)
-      //seam=curr_f->IsSeam(next_f);
-      seam=IsSeam(curr_f,next_f);
-    // if (vertexB)
-      // assert(!Handle_Singular(vert));
-    // ;
-    //assert(!vert->IsSingular());
-    possible_split=((on_border)||(seam));
-    complete_turn = next_f == f_init;
-  } while ((!possible_split)&&(!complete_turn));
-  face=VFI.Fi();
-  edge=VFI.Ei();
-  ///test that is not on a border
-  //assert(face->FFp(edge)!=face);
-}
-
-
-
-///intialize the mapping given an initial pos
-///whih must be initialized with FindInitialPos
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::VertexIndexing<DerivedV, DerivedF>::MapIndexes(const int  vert,
-                                                         const int edge_init,
-                                                         const int f_init)
-{
-  ///check that is not on border..
-  ///in such case maybe it's non manyfold
-  ///insert an initial index
-  int curr_index=AddNewIndex(vert);
-  ///and initialize the jumping pos
-  igl::HalfEdgeIterator<DerivedF> VFI(&F,&TT,&TTi,f_init,edge_init);
-  bool complete_turn=false;
-  do
-  {
-    int curr_f = VFI.Fi();
-    int curr_edge = VFI.Ei();
-    ///assing the current index
-    HandleS_Index(curr_f,curr_edge) = curr_index;
-    VFI.NextFE();
-    int next_f = VFI.Fi();
-    ///test if I've finiseh with the face exploration
-    complete_turn = (next_f==f_init);
-    ///or if I've just crossed a mismatch
-    if (!complete_turn)
-    {
-      bool seam=false;
-      //seam=curr_f->IsSeam(next_f);
-      seam=IsSeam(curr_f,next_f);
-      if (seam)
-      {
-        ///then add a new index
-        curr_index=AddNewIndex(vert);
-      }
-    }
-  } while (!complete_turn);
-}
-
-///intialize the mapping for a given vertex
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::VertexIndexing<DerivedV, DerivedF>::InitMappingSeam(const int vert)
-{
-  ///first rotate until find the first pos after a mismatch
-  ///or a border or return to the first position...
-  int f_init = VF[vert][0];
-  int indexE = VFi[vert][0];
-
-  igl::HalfEdgeIterator<DerivedF> VFI(&F,&TT,&TTi,f_init,indexE);
-
-  int edge_init;
-  int face_init;
-  FindInitialPos(vert,edge_init,face_init);
-  MapIndexes(vert,edge_init,face_init);
-}
-
-///intialize the mapping for a given sampled mesh
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::VertexIndexing<DerivedV, DerivedF>::InitMappingSeam()
-{
-  //num_scalar_variables=-1;
-  Handle_SystemInfo.num_scalar_variables=-1;
-  for (unsigned int i=0;i<V.rows();i++)
-    InitMappingSeam(i);
-
-  for (unsigned int j=0;j<V.rows();j++)
-  {
-    assert(HandleV_Integer[j].size()>0);
-    if (HandleV_Integer[j].size()>1)
-      duplicated.push_back(j);
-  }
-}
-
-///test consistency of face variables per vert mapping
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::VertexIndexing<DerivedV, DerivedF>::TestSeamMappingFace(const int f)
-{
-  for (int k=0;k<3;k++)
-  {
-    int indexV=HandleS_Index(f,k);
-    int v = F(f,k);
-    bool has_index=HasIndex(v,indexV);
-    assert(has_index);
-  }
-}
-
-///test consistency of face variables per vert mapping
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::VertexIndexing<DerivedV, DerivedF>::TestSeamMappingVertex(int indexVert)
-{
-  for (unsigned int k=0;k<HandleV_Integer[indexVert].size();k++)
-  {
-    int indexV=HandleV_Integer[indexVert][k];
-
-    ///get faces sharing vertex
-    std::vector<int> faces = VF[indexVert];
-    std::vector<int> indexes = VFi[indexVert];
-
-    for (unsigned int j=0;j<faces.size();j++)
-    {
-      int f = faces[j];
-      int index = indexes[j];
-      assert(F(f,index) == indexVert);
-      assert((index>=0)&&(index<3));
-
-      if (HandleS_Index(f,index) == indexV)
-        return;
-    }
-  }
-  assert(0);
-}
-
-
-///check consistency of variable mapping across seams
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::VertexIndexing<DerivedV, DerivedF>::TestSeamMapping()
-{
-  printf("\n TESTING SEAM INDEXES \n");
-  ///test F-V mapping
-  for (unsigned int j=0;j<F.rows();j++)
-    TestSeamMappingFace(j);
-
-  ///TEST  V-F MAPPING
-  for (unsigned int j=0;j<V.rows();j++)
-    TestSeamMappingVertex(j);
-
-}
-
-
-///vertex to variable mapping
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::VertexIndexing<DerivedV, DerivedF>::InitMapping()
-{
-  //use_direction_field=_use_direction_field;
-
-  IndexToVert.clear();
-  duplicated.clear();
-
-  InitMappingSeam();
-
-  Handle_SystemInfo.num_vert_variables=Handle_SystemInfo.num_scalar_variables+1;
-
-  ///end testing...
-  TestSeamMapping();
-}
-
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::VertexIndexing<DerivedV, DerivedF>::InitFaceIntegerVal()
-{
-  Handle_SystemInfo.num_integer_cuts=0;
-  for (unsigned int j=0;j<F.rows();j++)
-  {
-    for (int k=0;k<3;k++)
-    {
-      if (Handle_Seams(j,k))
-      {
-        Handle_Integer(j,k) = Handle_SystemInfo.num_integer_cuts;
-        Handle_SystemInfo.num_integer_cuts++;
-      }
-      else
-        Handle_Integer(j,k)=-1;
-    }
-  }
-}
-
-
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::VertexIndexing<DerivedV, DerivedF>::InitSeamInfo()
-{
-  Handle_SystemInfo.EdgeSeamInfo.clear();
-  for (unsigned int f0=0;f0<F.rows();f0++)
-  {
-    for (int k=0;k<3;k++)
-    {
-      int f1 = TT(f0,k);
-
-      if (f1 == -1)
-        continue;
-
-      bool seam = Handle_Seams(f0,k);
-      if (seam)
-      {
-        int v0,v0p,v1,v1p;
-        unsigned char MM;
-        int integerVar;
-        GetSeamInfo(f0,f1,k,v0,v1,v0p,v1p,MM,integerVar);
-        Handle_SystemInfo.EdgeSeamInfo.push_back(SeamInfo(v0,v1,v0p,v1p,MM,integerVar));
-      }
-    }
-  }
-}
-
-
-
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::PoissonSolver<DerivedV, DerivedF>::SolvePoisson(Eigen::VectorXd Stiffness,
-                                                          double vector_field_scale,
-                                                          double grid_res,
-                                                          bool direct_round,
-                                                          int localIter,
-                                                          bool _integer_rounding,
-                                                          bool _singularity_rounding,
-                                                          std::vector<int> roundVertices,
-                                                          std::vector<std::vector<int> > hardFeatures)
-{
-  Handle_Stiffness = Stiffness;
-
-  //initialization of flags and data structures
-  integer_rounding=_integer_rounding;
-
-  ids_to_round.clear();
-
-  clearUserConstraint();
-  // copy the user constraints number
-  for (size_t i = 0; i < hardFeatures.size(); ++i)
-  {
-    addSharpEdgeConstraint(hardFeatures[i][0],hardFeatures[i][1]);
-  }
-
-  ///Initializing Matrix
-
-  int t0=clock();
-
-  ///initialize the matrix ALLOCATING SPACE
-  InitMatrix();
-  if (DEBUGPRINT)
-    printf("\n ALLOCATED THE MATRIX \n");
-
-  ///build the laplacian system
-  BuildLaplacianMatrix(vector_field_scale);
-
-  // add seam constraints
-  BuildSeamConstraintsExplicitTranslation();
-
-  // add user defined constraints
-  BuildUserDefinedConstraints();
-
-  ////add the lagrange multiplier
-  FixBlockedVertex();
-
-  if (DEBUGPRINT)
-    printf("\n BUILT THE MATRIX \n");
-
-  if (integer_rounding)
-    AddToRoundVertices(roundVertices);
-
-  if (_singularity_rounding)
-      AddSingularityRound();
-
-  int t1=clock();
-  if (DEBUGPRINT) printf("\n time:%d \n",t1-t0);
-  if (DEBUGPRINT) printf("\n SOLVING \n");
-
-  MixedIntegerSolve(grid_res,direct_round,localIter);
-
-  int t2=clock();
-  if (DEBUGPRINT) printf("\n time:%d \n",t2-t1);
-  if (DEBUGPRINT) printf("\n ASSIGNING COORDS \n");
-
-  MapCoords();
-
-  int t3=clock();
-  if (DEBUGPRINT) printf("\n time:%d \n",t3-t2);
-  if (DEBUGPRINT) printf("\n FINISHED \n");
-}
-
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE igl::PoissonSolver<DerivedV, DerivedF>
-::PoissonSolver(const Eigen::PlainObjectBase<DerivedV> &_V,
-                const Eigen::PlainObjectBase<DerivedF> &_F,
-                const Eigen::PlainObjectBase<DerivedF> &_TT,
-                const Eigen::PlainObjectBase<DerivedF> &_TTi,
-                const Eigen::PlainObjectBase<DerivedV> &_PD1,
-                const Eigen::PlainObjectBase<DerivedV> &_PD2,
-                const Eigen::MatrixXi &_HandleS_Index,
-                const Eigen::Matrix<int, Eigen::Dynamic, 1>&_Handle_Singular,
-                const MeshSystemInfo &_Handle_SystemInfo //todo: const?
-):
-V(_V),
-F(_F),
-TT(_TT),
-TTi(_TTi),
-PD1(_PD1),
-PD2(_PD2),
-HandleS_Index(_HandleS_Index),
-Handle_Singular(_Handle_Singular),
-Handle_SystemInfo(_Handle_SystemInfo)
-{
-  UV        = Eigen::MatrixXd(V.rows(),2);
-  WUV       = Eigen::MatrixXd(F.rows(),6);
-  igl::doublearea(V,F,doublearea);
-  igl::per_face_normals(V,F,N);
-  igl::vertex_triangle_adjacency(V,F,VF,VFi);
-}
-
-
-///START SYSTEM ACCESS METHODS
-///add an entry to the LHS
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::PoissonSolver<DerivedV, DerivedF>::AddValA(int Xindex,
-                                                     int Yindex,
-                                                     double val)
-{
-  int size=(int)S.nrows();
-  assert(0 <= Xindex && Xindex < size);
-  assert(0 <= Yindex && Yindex < size);
-  S.A().addEntryReal(Xindex,Yindex,val);
-}
-
-///add a complex entry to the LHS
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::PoissonSolver<DerivedV, DerivedF>::AddComplexA(int VarXindex,
-                                                         int VarYindex,
-                                                         std::complex<double> val)
-{
-  int size=(int)S.nrows()/2;
-  assert(0 <= VarXindex && VarXindex < size);
-  assert(0 <= VarYindex && VarYindex < size);
-  S.A().addEntryCmplx(VarXindex,VarYindex,val);
-}
-
-///add a velue to the RHS
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::PoissonSolver<DerivedV, DerivedF>::AddValB(int Xindex,
-                                                     double val)
-{
-  int size=(int)S.nrows();
-  assert(0 <= Xindex && Xindex < size);
-  S.b()[Xindex] += val;
-}
-
-///add the area term, scalefactor is used to sum up
-///and normalize on the overlap zones
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::PoissonSolver<DerivedV, DerivedF>::AddAreaTerm(int index[3][3][2],double ScaleFactor)
-{
-  const double entry = 0.5*ScaleFactor;
-  double val[3][3]= {
-    {0,       entry, -entry},
-    {-entry,      0,  entry},
-    {entry,  -entry,      0}
-  };
-
-  for (int i=0;i<3;i++)
-    for (int j=0;j<3;j++)
-    {
-      ///add for both u and v
-      int Xindex=index[i][j][0]*2;
-      int Yindex=index[i][j][1]*2;
-
-      AddValA(Xindex+1,Yindex,-val[i][j]);
-      AddValA(Xindex,Yindex+1,val[i][j]);
-    }
-}
-
-///set the diagonal of the matrix (which is zero at the beginning)
-///such that the sum of a row or a colums is zero
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::PoissonSolver<DerivedV, DerivedF>::SetDiagonal(double val[3][3])
-{
-  for (int i=0;i<3;i++)
-  {
-    double sum=0;
-    for (int j=0;j<3;j++)
-      sum+=val[i][j];
-    val[i][i]=-sum;
-  }
-}
-
-///given a vector of scalar values and
-///a vector of indexes add such values
-///as specified by the indexes
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::PoissonSolver<DerivedV, DerivedF>::AddRHS(double b[6],
-                                                    int index[3])
-{
-  for (int i=0;i<3;i++)
-  {
-    double valU=b[i*2];
-    double valV=b[(i*2)+1];
-    AddValB((index[i]*2),valU);
-    AddValB((index[i]*2)+1,valV);
-  }
-}
-
-///add a 3x3 block matrix to the system matrix...
-///indexes are specified in the 3x3 matrix of x,y pairs
-///indexes must be multiplied by 2 cause u and v
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::PoissonSolver<DerivedV, DerivedF>::Add33Block(double val[3][3], int index[3][3][2])
-{
-  for (int i=0;i<3;i++)
-    for (int j=0;j<3;j++)
-    {
-      ///add for both u and v
-      int Xindex=index[i][j][0]*2;
-      int Yindex=index[i][j][1]*2;
-      assert((unsigned)Xindex<(n_vert_vars*2));
-      assert((unsigned)Yindex<(n_vert_vars*2));
-      AddValA(Xindex,Yindex,val[i][j]);
-      AddValA(Xindex+1,Yindex+1,val[i][j]);
-    }
-}
-
-///add a 3x3 block matrix to the system matrix...
-///indexes are specified in the 3x3 matrix of x,y pairs
-///indexes must be multiplied by 2 cause u and v
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::PoissonSolver<DerivedV, DerivedF>::Add44Block(double val[4][4],int index[4][4][2])
-{
-  for (int i=0;i<4;i++)
-    for (int j=0;j<4;j++)
-    {
-      ///add for both u and v
-      int Xindex=index[i][j][0]*2;
-      int Yindex=index[i][j][1]*2;
-      assert((unsigned)Xindex<(n_vert_vars*2));
-      assert((unsigned)Yindex<(n_vert_vars*2));
-      AddValA(Xindex,Yindex,val[i][j]);
-      AddValA(Xindex+1,Yindex+1,val[i][j]);
-    }
-}
-///END SYSTEM ACCESS METHODS
-
-///START COMMON MATH FUNCTIONS
-///return the complex encoding the rotation
-///for a given missmatch interval
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE std::complex<double> igl::PoissonSolver<DerivedV, DerivedF>::GetRotationComplex(int interval)
-{
-  assert((interval>=0)&&(interval<4));
-
-  switch(interval)
-  {
-    case 0:return std::complex<double>(1,0);
-    case 1:return std::complex<double>(0,1);
-    case 2:return std::complex<double>(-1,0);
-    default:return std::complex<double>(0,-1);
-  }
-}
-
-///END COMMON MATH FUNCTIONS
-
-
-///START ENERGY MINIMIZATION PART
-///initialize the LHS for a given face
-///for minimization of Dirichlet's energy
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::PoissonSolver<DerivedV, DerivedF>::perElementLHS(int f,
-                                                           double val[3][3],
-                                                           int index[3][3][2])
-{
-  ///initialize to zero
-  for (int x=0;x<3;x++)
-    for (int y=0;y<3;y++)
-      val[x][y]=0;
-
-  ///get the vertices
-  int v[3];
-  v[0] = F(f,0);
-  v[1] = F(f,1);
-  v[2] = F(f,2);
-
-  ///get the indexes of vertex instance (to consider cuts)
-  ///for the current face
-  int Vindexes[3];
-  Vindexes[0]=HandleS_Index(f,0);
-  Vindexes[1]=HandleS_Index(f,1);
-  Vindexes[2]=HandleS_Index(f,2);
-
-  ///initialize the indexes for the block
-  for (int x=0;x<3;x++)
-    for (int y=0;y<3;y++)
-    {
-      index[x][y][0]=Vindexes[x];
-      index[x][y][1]=Vindexes[y];
-    }
-
-  ///initialize edges
-  Eigen::Matrix<typename DerivedV::Scalar, 3, 1> e[3];
-  for (int k=0;k<3;k++)
-    e[k] = V.row(v[(k+2)%3]) - V.row(v[(k+1)%3]);
-
-  ///then consider area but also considering scale factor dur to overlaps
-
-  double areaT = doublearea(f)/2.0;
-
-  for (int x=0;x<3;x++)
-    for (int y=0;y<3;y++)
-      if (x!=y)
-      {
-        double num =  (e[x].dot(e[y]));
-        val[x][y]  =  num/(4.0*areaT);
-        val[x][y]  *= Handle_Stiffness[f];//f->stiffening;
-      }
-
-  ///set the matrix as diagonal
-  SetDiagonal(val);
-}
-
-///initialize the RHS for a given face
-///for minimization of Dirichlet's energy
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::PoissonSolver<DerivedV, DerivedF>::perElementRHS(int f,
-                                                           double b[6],
-                                                           double vector_field_scale)
-{
-
-  /// then set the rhs
-  Eigen::Matrix<typename DerivedV::Scalar, 3, 1> scaled_Kreal;
-  Eigen::Matrix<typename DerivedV::Scalar, 3, 1> scaled_Kimag;
-  Eigen::Matrix<typename DerivedV::Scalar, 3, 1> fNorm = N.row(f);
-  Eigen::Matrix<typename DerivedV::Scalar, 3, 1> p[3];
-  p[0] = V.row(F(f,0));
-  p[1] = V.row(F(f,1));
-  p[2] = V.row(F(f,2));
-
-  Eigen::Matrix<typename DerivedV::Scalar, 3, 1> neg_t[3];
-  neg_t[0] = fNorm.cross(p[2] - p[1]);
-  neg_t[1] = fNorm.cross(p[0] - p[2]);
-  neg_t[2] = fNorm.cross(p[1] - p[0]);
-
-  Eigen::Matrix<typename DerivedV::Scalar, 3, 1> K1,K2;
-  K1 = PD1.row(f);
-  K2 = -PD2.row(f); // TODO: the "-" accounts for the orientation of local_basis.h, adapt the code before and remove the "-"
-
-  scaled_Kreal = K1*(vector_field_scale)/2;
-  scaled_Kimag = K2*(vector_field_scale)/2;
-
-  double stiff_val = Handle_Stiffness[f];
-
-  b[0] = scaled_Kreal.dot(neg_t[0]) * stiff_val;
-  b[1] = scaled_Kimag.dot(neg_t[0]) * stiff_val;
-  b[2] = scaled_Kreal.dot(neg_t[1]) * stiff_val;
-  b[3] = scaled_Kimag.dot(neg_t[1]) * stiff_val;
-  b[4] = scaled_Kreal.dot(neg_t[2]) * stiff_val;
-  b[5] = scaled_Kimag.dot(neg_t[2]) * stiff_val;
-
-  //    if (f == 0)
-  //    {
-  //      cerr << "DEBUG!!!" << endl;
-  //
-  //
-  //      for (unsigned z = 0; z<6; ++z)
-  //        cerr << b[z] << " ";
-  //      cerr << endl;
-  //
-  //      scaled_Kreal = K1*(vector_field_scale)/2;
-  //      scaled_Kimag = -K2*(vector_field_scale)/2;
-  //
-  //      double stiff_val = Handle_Stiffness[f];
-  //
-  //      b[0] = scaled_Kreal.dot(neg_t[0]) * stiff_val;
-  //      b[1] = scaled_Kimag.dot(neg_t[0]) * stiff_val;
-  //      b[2] = scaled_Kreal.dot(neg_t[1]) * stiff_val;
-  //      b[3] = scaled_Kimag.dot(neg_t[1]) * stiff_val;
-  //      b[4] = scaled_Kreal.dot(neg_t[2]) * stiff_val;
-  //      b[5] = scaled_Kimag.dot(neg_t[2]) * stiff_val;
-  //
-  //      for (unsigned z = 0; z<6; ++z)
-  //        cerr << b[z] << " ";
-  //      cerr << endl;
-  //
-  //    }
-
-}
-
-///evaluate the LHS and RHS for a single face
-///for minimization of Dirichlet's energy
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::PoissonSolver<DerivedV, DerivedF>::PerElementSystemReal(int f,
-                                                                  double val[3][3],
-                                                                  int index[3][3][2],
-                                                                  double b[6],
-                                                                  double vector_field_scale)
-{
-  perElementLHS(f,val,index);
-  perElementRHS(f,b,vector_field_scale);
-}
-///END ENERGY MINIMIZATION PART
-
-///START FIXING VERTICES
-///set a given vertex as fixed
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::PoissonSolver<DerivedV, DerivedF>::AddFixedVertex(int v)
-{
-  n_fixed_vars++;
-  Hard_constraints.push_back(v);
-}
-
-///find vertex to fix in case we're using
-///a vector field NB: multiple components not handled
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::PoissonSolver<DerivedV, DerivedF>::FindFixedVertField()
-{
-  Hard_constraints.clear();
-
-  n_fixed_vars=0;
-  ///fix the first singularity
-  for (unsigned int v=0;v<V.rows();v++)
-  {
-    if (Handle_Singular(v))
-    {
-      AddFixedVertex(v);
-      UV.row(v) << 0,0;
-      return;
-    }
-  }
-
-  ///if anything fixed fix the first
-  AddFixedVertex(0); // TODO HERE IT ISSSSSS
-  UV.row(0) << 0,0;
-  std::cerr << "No vertices to fix, I am fixing the first vertex to the origin!" << std::endl;
-}
-
-///find hard constraint depending if using or not
-///a vector field
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::PoissonSolver<DerivedV, DerivedF>::FindFixedVert()
-{
-  Hard_constraints.clear();
-  FindFixedVertField();
-}
-
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE int igl::PoissonSolver<DerivedV, DerivedF>::GetFirstVertexIndex(int v)
-{
-  return HandleS_Index(VF[v][0],VFi[v][0]);
-}
-
-///fix the vertices which are flagged as fixed
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::PoissonSolver<DerivedV, DerivedF>::FixBlockedVertex()
-{
-  int offset_row = n_vert_vars*2 + num_cut_constraint*2;
-
-  unsigned int constr_num = 0;
-  for (unsigned int i=0;i<Hard_constraints.size();i++)
-  {
-    int v = Hard_constraints[i];
-
-    ///get first index of the vertex that must blocked
-    //int index=v->vertex_index[0];
-    int index = GetFirstVertexIndex(v);
-
-    ///multiply times 2 because of uv
-    int indexvert = index*2;
-
-    ///find the first free row to add the constraint
-    int indexRow = (offset_row+constr_num*2);
-    int indexCol = indexRow;
-
-    ///add fixing constraint LHS
-    AddValA(indexRow,indexvert,1);
-    AddValA(indexRow+1,indexvert+1,1);
-
-    ///add fixing constraint RHS
-    AddValB(indexCol,  UV(v,0));
-    AddValB(indexCol+1,UV(v,1));
-
-    constr_num++;
-  }
-  assert(constr_num==n_fixed_vars);
-}
-///END FIXING VERTICES
-
-///HANDLING SINGULARITY
-//set the singularity round to integer location
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::PoissonSolver<DerivedV, DerivedF>::AddSingularityRound()
-{
-  for (unsigned int v=0;v<V.rows();v++)
-  {
-    if (Handle_Singular(v))
-    {
-      int index0=GetFirstVertexIndex(v);
-      ids_to_round.push_back( index0*2   );
-      ids_to_round.push_back((index0*2)+1);
-    }
-  }
-}
-
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::PoissonSolver<DerivedV, DerivedF>::AddToRoundVertices(std::vector<int> ids)
-{
-  for (size_t i = 0; i < ids.size(); ++i)
-  {
-    if (ids[i] < 0 || ids[i] >= V.rows())
-      std::cerr << "WARNING: Ignored round vertex constraint, vertex " << ids[i] << " does not exist in the mesh." << std::endl;
-    int index0 = GetFirstVertexIndex(ids[i]);
-    ids_to_round.push_back( index0*2   );
-    ids_to_round.push_back((index0*2)+1);
-  }
-}
-
-///START GENERIC SYSTEM FUNCTIONS
-//build the laplacian matrix cyclyng over all rangemaps
-//and over all faces
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::PoissonSolver<DerivedV, DerivedF>::BuildLaplacianMatrix(double vfscale)
-{
-  ///then for each face
-  for (unsigned int f=0;f<F.rows();f++)
-  {
-
-    int var_idx[3]; //vertex variable indices
-
-    for(int k = 0; k < 3; ++k)
-      var_idx[k] = HandleS_Index(f,k);
-
-    ///block of variables
-    double val[3][3];
-    ///block of vertex indexes
-    int index[3][3][2];
-    ///righe hand side
-    double b[6];
-    ///compute the system for the given face
-    PerElementSystemReal(f, val,index, b, vfscale);
-
-    //Add the element to the matrix
-    Add33Block(val,index);
-
-    ///add right hand side
-    AddRHS(b,var_idx);
-  }
-}
-
-///find different sized of the system
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::PoissonSolver<DerivedV, DerivedF>::FindSizes()
-{
-  ///find the vertex that need to be fixed
-  FindFixedVert();
-
-  ///REAL PART
-  n_vert_vars = Handle_SystemInfo.num_vert_variables;
-
-  ///INTEGER PART
-  ///the total number of integer variables
-  n_integer_vars = Handle_SystemInfo.num_integer_cuts;
-
-  ///CONSTRAINT PART
-  num_cut_constraint = Handle_SystemInfo.EdgeSeamInfo.size()*2;
-
-  num_constraint_equations = num_cut_constraint*2 + n_fixed_vars*2 + num_userdefined_constraint;
-
-  ///total variable of the system
-  num_total_vars = n_vert_vars*2+n_integer_vars*2;
-
-  ///initialize matrix size
-
-  system_size = num_total_vars + num_constraint_equations;
-
-  if (DEBUGPRINT)     printf("\n*** SYSTEM VARIABLES *** \n");
-  if (DEBUGPRINT)     printf("* NUM REAL VERTEX VARIABLES %d \n",n_vert_vars);
-
-  if (DEBUGPRINT)     printf("\n*** SINGULARITY *** \n ");
-  if (DEBUGPRINT)     printf("* NUM SINGULARITY %d\n",(int)ids_to_round.size()/2);
-
-  if (DEBUGPRINT)     printf("\n*** INTEGER VARIABLES *** \n");
-  if (DEBUGPRINT)     printf("* NUM INTEGER VARIABLES %d \n",(int)n_integer_vars);
-
-  if (DEBUGPRINT)     printf("\n*** CONSTRAINTS *** \n ");
-  if (DEBUGPRINT)     printf("* NUM FIXED CONSTRAINTS %d\n",n_fixed_vars);
-  if (DEBUGPRINT)     printf("* NUM CUTS CONSTRAINTS %d\n",num_cut_constraint);
-  if (DEBUGPRINT)     printf("* NUM USER DEFINED CONSTRAINTS %d\n",num_userdefined_constraint);
-
-  if (DEBUGPRINT)     printf("\n*** TOTAL SIZE *** \n");
-  if (DEBUGPRINT)     printf("* TOTAL VARIABLE SIZE (WITH INTEGER TRASL) %d \n",num_total_vars);
-  if (DEBUGPRINT)     printf("* TOTAL CONSTRAINTS %d \n",num_constraint_equations);
-  if (DEBUGPRINT)     printf("* MATRIX SIZE  %d \n",system_size);
-}
-
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::PoissonSolver<DerivedV, DerivedF>::AllocateSystem()
-{
-  S.initialize(system_size, system_size);
-  printf("\n INITIALIZED SPARSE MATRIX OF %d x %d \n",system_size, system_size);
-}
-
-///intitialize the whole matrix
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::PoissonSolver<DerivedV, DerivedF>::InitMatrix()
-{
-  FindSizes();
-  AllocateSystem();
-}
-
-///map back coordinates after that
-///the system has been solved
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::PoissonSolver<DerivedV, DerivedF>::MapCoords()
-{
-  ///map coords to faces
-  for (unsigned int f=0;f<F.rows();f++)
-  {
-
-    for (int k=0;k<3;k++)
-    {
-      //get the index of the variable in the system
-      int indexUV = HandleS_Index(f,k);
-      ///then get U and V coords
-      double U=X[indexUV*2];
-      double V=X[indexUV*2+1];
-
-      WUV(f,k*2 + 0) = U;
-      WUV(f,k*2 + 1) = V;
-    }
-  }
-
-#if 0
-  ///initialize the vector of integer variables to return their values
-  Handle_SystemInfo.IntegerValues.resize(n_integer_vars*2);
-  int baseIndex = (n_vert_vars)*2;
-  int endIndex  = baseIndex+n_integer_vars*2;
-  int index     = 0;
-  for (int i=baseIndex; i<endIndex; i++)
-  {
-    ///assert that the value is an integer value
-    double value=X[i];
-    double diff = value-(int)floor(value+0.5);
-    assert(diff<0.00000001);
-    Handle_SystemInfo.IntegerValues[index] = value;
-    index++;
-  }
-#endif
-}
-
-///END GENERIC SYSTEM FUNCTIONS
-
-///set the constraints for the inter-range cuts
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::PoissonSolver<DerivedV, DerivedF>::BuildSeamConstraintsExplicitTranslation()
-{
-  ///add constraint(s) for every seam edge (not halfedge)
-  int offset_row = n_vert_vars;
-  ///current constraint row
-  int constr_row = offset_row;
-  ///current constraint
-  unsigned int constr_num = 0;
-
-  for (unsigned int i=0; i<num_cut_constraint/2; i++)
-  {
-    unsigned char interval = Handle_SystemInfo.EdgeSeamInfo[i].MMatch;
-    if (interval==1)
-      interval=3;
-    else
-      if(interval==3)
-        interval=1;
-
-    int p0  = Handle_SystemInfo.EdgeSeamInfo[i].v0;
-    int p1  = Handle_SystemInfo.EdgeSeamInfo[i].v1;
-    int p0p = Handle_SystemInfo.EdgeSeamInfo[i].v0p;
-    int p1p = Handle_SystemInfo.EdgeSeamInfo[i].v1p;
-
-    std::complex<double> rot = GetRotationComplex(interval);
-
-    ///get the integer variable
-    int integerVar = offset_row+Handle_SystemInfo.EdgeSeamInfo[i].integerVar;
-
-    if (integer_rounding)
-    {
-      ids_to_round.push_back(integerVar*2);
-      ids_to_round.push_back(integerVar*2+1);
-    }
-
-    AddComplexA(constr_row, p0 ,  rot);
-    AddComplexA(constr_row, p0p,   -1);
-    ///then translation...considering the rotation
-    ///due to substitution
-    AddComplexA(constr_row, integerVar, 1);
-
-    AddValB(2*constr_row  ,0);
-    AddValB(2*constr_row+1,0);
-    constr_row +=1;
-    constr_num++;
-
-    AddComplexA(constr_row, p1,  rot);
-    AddComplexA(constr_row, p1p, -1);
-
-    ///other translation
-    AddComplexA(constr_row, integerVar  , 1);
-
-    AddValB(2*constr_row,0);
-    AddValB(2*constr_row+1,0);
-
-    constr_row +=1;
-    constr_num++;
-  }
-}
-
-///set the constraints for the inter-range cuts
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::PoissonSolver<DerivedV, DerivedF>::BuildUserDefinedConstraints()
-{
-  /// the user defined constraints are at the end
-  int offset_row = n_vert_vars*2 + num_cut_constraint*2 + n_fixed_vars*2;
-
-  ///current constraint row
-  int constr_row = offset_row;
-
-  assert(num_userdefined_constraint == userdefined_constraints.size());
-
-  for (unsigned int i=0; i<num_userdefined_constraint; i++)
-  {
-    for (unsigned int j=0; j<userdefined_constraints[i].size()-1; ++j)
-    {
-      AddValA(constr_row, j ,  userdefined_constraints[i][j]);
-    }
-
-    AddValB(constr_row,userdefined_constraints[i][userdefined_constraints[i].size()-1]);
-
-    constr_row +=1;
-  }
-}
-
-///call of the mixed integer solver
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::PoissonSolver<DerivedV, DerivedF>::MixedIntegerSolve(double cone_grid_res,
-                                                               bool direct_round,
-                                                               int localIter)
-{
-  X = std::vector<double>((n_vert_vars+n_integer_vars)*2);
-
-  ///variables part
-  int ScalarSize = n_vert_vars*2;
-  int SizeMatrix = (n_vert_vars+n_integer_vars)*2;
-
-  if (DEBUGPRINT)
-    printf("\n ALLOCATED X \n");
-
-  ///matrix A
-  gmm::col_matrix< gmm::wsvector< double > > A(SizeMatrix,SizeMatrix); // lhs matrix variables +
-
-  ///constraints part
-  int CsizeX = num_constraint_equations;
-  int CsizeY = SizeMatrix+1;
-  gmm::row_matrix< gmm::wsvector< double > > C(CsizeX,CsizeY); // constraints
-
-  if (DEBUGPRINT)
-    printf("\n ALLOCATED QMM STRUCTURES \n");
-
-  std::vector<double> rhs(SizeMatrix,0);  // rhs
-
-  if (DEBUGPRINT)
-    printf("\n ALLOCATED RHS STRUCTURES \n");
-
-  //// copy LHS
-  for(int i = 0; i < (int)S.A().nentries(); ++i)
-  {
-    int row  = S.A().rowind()[i];
-    int col  = S.A().colind()[i];
-    int size =(int)S.nrows();
-    assert(0 <= row && row < size);
-    assert(0 <= col && col < size);
-
-    // it's either part of the matrix
-    if (row < ScalarSize)
-    {
-      A(row, col) += S.A().vals()[i];
-    }
-    // or it's a part of the constraint
-    else
-    {
-      assert ((unsigned int)row < (n_vert_vars+num_constraint_equations)*2);
-      int r = row - ScalarSize;
-      assert(r   < CsizeX);
-      assert(col < CsizeY);
-      C(r  , col  ) +=  S.A().vals()[i];
-    }
-  }
-
-  if (DEBUGPRINT)
-    printf("\n SET %d INTEGER VALUES \n",n_integer_vars);
-
-  ///add penalization term for integer variables
-  double penalization = 0.000001;
-  int offline_index   = ScalarSize;
-  for(unsigned int i = 0; i < (n_integer_vars)*2; ++i)
-  {
-    int index=offline_index+i;
-    A(index,index)=penalization;
-  }
-
-  if (DEBUGPRINT)
-    printf("\n SET RHS \n");
-
-  // copy RHS
-  for(int i = 0; i < (int)ScalarSize; ++i)
-  {
-    rhs[i] = S.getRHSReal(i) * cone_grid_res;
-  }
-
-  // copy constraint RHS
-  if (DEBUGPRINT)
-    printf("\n SET %d CONSTRAINTS \n",num_constraint_equations);
-
-  for(unsigned int i = 0; i < num_constraint_equations; ++i)
-  {
-    C(i, SizeMatrix) = -S.getRHSReal(ScalarSize + i) * cone_grid_res;
-  }
-
-  ///copy values back into S
-  COMISO::ConstrainedSolver solver;
-
-  solver.misolver().set_local_iters(localIter);
-
-  solver.misolver().set_direct_rounding(direct_round);
-
-  std::sort(ids_to_round.begin(),ids_to_round.end());
-  std::vector<int>::iterator new_end=std::unique(ids_to_round.begin(),ids_to_round.end());
-  int dist=distance(ids_to_round.begin(),new_end);
-  ids_to_round.resize(dist);
-
-  solver.solve( C, A, X, rhs, ids_to_round, 0.0, false, false);
-}
-
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::PoissonSolver<DerivedV, DerivedF>::clearUserConstraint()
-{
-  num_userdefined_constraint = 0;
-  userdefined_constraints.clear();
-}
-
-template <typename DerivedV, typename DerivedF>
-IGL_INLINE void igl::PoissonSolver<DerivedV, DerivedF>::addSharpEdgeConstraint(int fid, int vid)
-{
-  // prepare constraint
-  std::vector<int> c(Handle_SystemInfo.num_vert_variables*2 + 1);
-
-  for (size_t i = 0; i < c.size(); ++i)
-  {
-    c[i] = 0;
-  }
-
-  int v1 = F(fid,vid);
-  int v2 = F(fid,(vid+1)%3);
-
-  Eigen::Matrix<typename DerivedV::Scalar, 3, 1> e = V.row(v2) - V.row(v1);
-  e = e.normalized();
-
-  int v1i = HandleS_Index(fid,vid);//GetFirstVertexIndex(v1);
-  int v2i = HandleS_Index(fid,(vid+1)%3);//GetFirstVertexIndex(v2);
-
-  double d1 = fabs(e.dot(PD1.row(fid).normalized()));
-  double d2 = fabs(e.dot(PD2.row(fid).normalized()));
-
-  int offset = 0;
-
-  if (d1>d2)
-    offset = 1;
-
-  ids_to_round.push_back((v1i * 2) + offset);
-  ids_to_round.push_back((v2i * 2) + offset);
-
-  // add constraint
-  c[(v1i * 2) + offset] =  1;
-  c[(v2i * 2) + offset] = -1;
-
-  // add to the user-defined constraints
-  num_userdefined_constraint++;
-  userdefined_constraints.push_back(c);
-
-}
-
-
-
-template <typename DerivedV, typename DerivedF, typename DerivedU>
-IGL_INLINE igl::MIQ_class<DerivedV, DerivedF, DerivedU>::MIQ_class(const Eigen::PlainObjectBase<DerivedV> &V_,
-                                                        const Eigen::PlainObjectBase<DerivedF> &F_,
-                                                        const Eigen::PlainObjectBase<DerivedV> &PD1_combed,
-                                                        const Eigen::PlainObjectBase<DerivedV> &PD2_combed,
-                                                        // const Eigen::PlainObjectBase<DerivedV> &BIS1_combed,
-                                                        // const Eigen::PlainObjectBase<DerivedV> &BIS2_combed,
-                                                        const Eigen::Matrix<int, Eigen::Dynamic, 3> &Handle_MMatch,
-                                                        const Eigen::Matrix<int, Eigen::Dynamic, 1> &Handle_Singular,
-                                                        // const Eigen::Matrix<int, Eigen::Dynamic, 1> &Handle_SingularDegree,
-                                                        const Eigen::Matrix<int, Eigen::Dynamic, 3> &Handle_Seams,
-                                                        Eigen::PlainObjectBase<DerivedU> &UV,
-                                                        Eigen::PlainObjectBase<DerivedF> &FUV,
-                                                        double GradientSize,
-                                                        double Stiffness,
-                                                        bool DirectRound,
-                                                        int iter,
-                                                        int localIter,
-                                                        bool DoRound,
-                                                        bool SingularityRound,
-                                                        std::vector<int> roundVertices,
-                                                        std::vector<std::vector<int> > hardFeatures):
-V(V_),
-F(F_)
-{
-  igl::local_basis(V,F,B1,B2,B3);
-  igl::triangle_triangle_adjacency(V,F,TT,TTi);
-
-  // Prepare indexing for the linear system
-  VertexIndexing<DerivedV, DerivedF> VInd(V, F, TT, TTi, /*BIS1_combed, BIS2_combed,*/ Handle_MMatch, /*Handle_Singular, Handle_SingularDegree,*/ Handle_Seams);
-
-  VInd.InitMapping();
-  VInd.InitFaceIntegerVal();
-  VInd.InitSeamInfo();
-
-  Eigen::PlainObjectBase<DerivedV> PD1_combed_for_poisson, PD2_combed_for_poisson;
-  // Rotate by 90 degrees CCW
-  PD1_combed_for_poisson.setZero(PD1_combed.rows(),3);
-  PD2_combed_for_poisson.setZero(PD2_combed.rows(),3);
-  for (unsigned i=0; i<PD1_combed.rows();++i)
-  {
-    double n1 = PD1_combed.row(i).norm();
-    double n2 = PD2_combed.row(i).norm();
-
-    double a1 = atan2(B2.row(i).dot(PD1_combed.row(i)),B1.row(i).dot(PD1_combed.row(i)));
-    double a2 = atan2(B2.row(i).dot(PD2_combed.row(i)),B1.row(i).dot(PD2_combed.row(i)));
-
-    a1 += M_PI/2;
-    a2 += M_PI/2;
-
-
-    PD1_combed_for_poisson.row(i) = cos(a1) * B1.row(i) + sin(a1) * B2.row(i);
-    PD2_combed_for_poisson.row(i) = cos(a2) * B1.row(i) + sin(a2) * B2.row(i);
-
-    PD1_combed_for_poisson.row(i) = PD1_combed_for_poisson.row(i).normalized() * n1;
-    PD2_combed_for_poisson.row(i) = PD2_combed_for_poisson.row(i).normalized() * n2;
-  }
-
-
-  // Assemble the system and solve
-  PoissonSolver<DerivedV, DerivedF> PSolver(V,
-                                            F,
-                                            TT,
-                                            TTi,
-                                            PD1_combed_for_poisson,
-                                            PD2_combed_for_poisson,
-                                            VInd.HandleS_Index,
-                                            /*VInd.Handle_Singular*/Handle_Singular,
-                                            VInd.Handle_SystemInfo);
-  Handle_Stiffness = Eigen::VectorXd::Constant(F.rows(),1);
-
-
-  if (iter > 0) // do stiffening
-  {
-    for (int i=0;i<iter;i++)
-    {
-      PSolver.SolvePoisson(Handle_Stiffness, GradientSize,1.f,DirectRound,localIter,DoRound,SingularityRound,roundVertices,hardFeatures);
-      int nflips=NumFlips(PSolver.WUV);
-      bool folded = updateStiffeningJacobianDistorsion(GradientSize,PSolver.WUV);
-      printf("ITERATION %d FLIPS %d \n",i,nflips);
-      if (!folded)break;
-    }
-  }
-  else
-  {
-    PSolver.SolvePoisson(Handle_Stiffness,GradientSize,1.f,DirectRound,localIter,DoRound,SingularityRound,roundVertices,hardFeatures);
-  }
-
-  int nflips=NumFlips(PSolver.WUV);
-  printf("**** END OPTIMIZING #FLIPS %d  ****\n",nflips);
-
-  fflush(stdout);
-  WUV = PSolver.WUV;
-
-}
-
-template <typename DerivedV, typename DerivedF, typename DerivedU>
-IGL_INLINE void igl::MIQ_class<DerivedV, DerivedF, DerivedU>::extractUV(Eigen::PlainObjectBase<DerivedU> &UV_out,
-                                                             Eigen::PlainObjectBase<DerivedF> &FUV_out)
-{
-  //      int f = F.rows();
-  int f = WUV.rows();
-
-  unsigned vtfaceid[f*3];
-  std::vector<double> vtu;
-  std::vector<double> vtv;
-
-  std::vector<std::vector<double> > listUV;
-  unsigned counter = 0;
-
-  for (unsigned i=0; i<f; ++i)
-  {
-    for (unsigned j=0; j<3; ++j)
-    {
-      std::vector<double> t(3);
-      t[0] = WUV(i,j*2 + 0);
-      t[1] = WUV(i,j*2 + 1);
-      t[2] = counter++;
-      listUV.push_back(t);
-    }
-  }
-  std::sort(listUV.begin(),listUV.end());
-
-  counter = 0;
-  unsigned k = 0;
-  while (k < f*3)
-  {
-    double u = listUV[k][0];
-    double v = listUV[k][1];
-    unsigned id = round(listUV[k][2]);
-
-    vtfaceid[id] = counter;
-    vtu.push_back(u);
-    vtv.push_back(v);
-
-    unsigned j=1;
-    while(k+j < f*3 && u == listUV[k+j][0] && v == listUV[k+j][1])
-    {
-      unsigned tid = round(listUV[k+j][2]);
-      vtfaceid[tid] = counter;
-      ++j;
-    }
-    k = k+j;
-    counter++;
-  }
-
-  UV_out.resize(vtu.size(),2);
-  for (unsigned i=0; i<vtu.size(); ++i)
-  {
-    UV_out(i,0) = vtu[i];
-    UV_out(i,1) = vtv[i];
-  }
-
-  FUV_out.resize(f,3);
-
-  unsigned vcounter = 0;
-  for (unsigned i=0; i<f; ++i)
-  {
-    FUV_out(i,0)  = vtfaceid[vcounter++];
-    FUV_out(i,1)  = vtfaceid[vcounter++];
-    FUV_out(i,2)  = vtfaceid[vcounter++];
-  }
-
-}
-
-template <typename DerivedV, typename DerivedF, typename DerivedU>
-IGL_INLINE int igl::MIQ_class<DerivedV, DerivedF, DerivedU>::NumFlips(const Eigen::MatrixXd& WUV)
-{
-  int numFl=0;
-  for (unsigned int i=0;i<F.rows();i++)
-  {
-    if (IsFlipped(i, WUV))
-      numFl++;
-  }
-  return numFl;
-}
-
-template <typename DerivedV, typename DerivedF, typename DerivedU>
-IGL_INLINE double igl::MIQ_class<DerivedV, DerivedF, DerivedU>::Distortion(int f, double h, const Eigen::MatrixXd& WUV)
-{
-  assert(h > 0);
-
-  Eigen::Vector2d uv0,uv1,uv2;
-
-  uv0 << WUV(f,0), WUV(f,1);
-  uv1 << WUV(f,2), WUV(f,3);
-  uv2 << WUV(f,4), WUV(f,5);
-
-  Eigen::Matrix<typename DerivedV::Scalar, 3, 1> p0 = V.row(F(f,0));
-  Eigen::Matrix<typename DerivedV::Scalar, 3, 1> p1 = V.row(F(f,1));
-  Eigen::Matrix<typename DerivedV::Scalar, 3, 1> p2 = V.row(F(f,2));
-
-  Eigen::Matrix<typename DerivedV::Scalar, 3, 1> norm = (p1 - p0).cross(p2 - p0);
-  double area2 = norm.norm();
-  double area2_inv  = 1.0 / area2;
-  norm *= area2_inv;
-
-  if (area2 > 0)
-  {
-    // Singular values of the Jacobian
-    Eigen::Matrix<typename DerivedV::Scalar, 3, 1> neg_t0 = norm.cross(p2 - p1);
-    Eigen::Matrix<typename DerivedV::Scalar, 3, 1> neg_t1 = norm.cross(p0 - p2);
-    Eigen::Matrix<typename DerivedV::Scalar, 3, 1> neg_t2 = norm.cross(p1 - p0);
-
-    Eigen::Matrix<typename DerivedV::Scalar, 3, 1> diffu =  (neg_t0 * uv0(0) +neg_t1 *uv1(0) +  neg_t2 * uv2(0) )*area2_inv;
-    Eigen::Matrix<typename DerivedV::Scalar, 3, 1> diffv = (neg_t0 * uv0(1) + neg_t1*uv1(1) +  neg_t2*uv2(1) )*area2_inv;
-
-    // first fundamental form
-    double I00 = diffu.dot(diffu);  // guaranteed non-neg
-    double I01 = diffu.dot(diffv);  // I01 = I10
-    double I11 = diffv.dot(diffv);  // guaranteed non-neg
-
-    // eigenvalues of a 2x2 matrix
-    // [a00 a01]
-    // [a10 a11]
-    // 1/2 * [ (a00 + a11) +/- sqrt((a00 - a11)^2 + 4 a01 a10) ]
-    double trI = I00 + I11;                     // guaranteed non-neg
-    double diffDiag = I00 - I11;                // guaranteed non-neg
-    double sqrtDet = sqrt(std::max(0.0, diffDiag*diffDiag +
-                                   4 * I01 * I01)); // guaranteed non-neg
-    double sig1 = 0.5 * (trI + sqrtDet); // higher singular value
-    double sig2 = 0.5 * (trI - sqrtDet); // lower singular value
-
-    // Avoid sig2 < 0 due to numerical error
-    if (fabs(sig2) < 1.0e-8)
-      sig2 = 0;
-
-    assert(sig1 >= 0);
-    assert(sig2 >= 0);
-
-    if (sig2 < 0) {
-      printf("Distortion will be NaN! sig1^2 is negative (%lg)\n",
-             sig2);
-    }
-
-    // The singular values of the Jacobian are the sqrts of the
-    // eigenvalues of the first fundamental form.
-    sig1 = sqrt(sig1);
-    sig2 = sqrt(sig2);
-
-    // distortion
-    double tao = IsFlipped(f,WUV) ? -1 : 1;
-    double factor = tao / h;
-    double lam = fabs(factor * sig1 - 1) + fabs(factor * sig2 - 1);
-    return lam;
-  }
-  else {
-    return 10; // something "large"
-  }
-}
-
-////////////////////////////////////////////////////////////////////////////
-// Approximate the distortion laplacian using a uniform laplacian on
-//  the dual mesh:
-//      ___________
-//      \-1 / \-1 /
-//       \ / 3 \ /
-//        \-----/
-//         \-1 /
-//          \ /
-//
-//  @param[in]  f   facet on which to compute distortion laplacian
-//  @param[in]  h   scaling factor applied to cross field
-//  @return     distortion laplacian for f
-///////////////////////////////////////////////////////////////////////////
-template <typename DerivedV, typename DerivedF, typename DerivedU>
-IGL_INLINE double igl::MIQ_class<DerivedV, DerivedF, DerivedU>::LaplaceDistortion(const int f, double h, const Eigen::MatrixXd& WUV)
-{
-  double mydist = Distortion(f, h, WUV);
-  double lapl=0;
-  for (int i=0;i<3;i++)
-  {
-    if (TT(f,i) != -1)
-      lapl += (mydist - Distortion(TT(f,i), h, WUV));
-  }
-  return lapl;
-}
-
-template <typename DerivedV, typename DerivedF, typename DerivedU>
-IGL_INLINE bool igl::MIQ_class<DerivedV, DerivedF, DerivedU>::updateStiffeningJacobianDistorsion(double grad_size, const Eigen::MatrixXd& WUV)
-{
-  bool flipped = NumFlips(WUV)>0;
-
-  if (!flipped)
-    return false;
-
-  double maxL=0;
-  double maxD=0;
-
-  if (flipped)
-  {
-    const double c = 1.0;
-    const double d = 5.0;
-
-    for (unsigned int i = 0; i < F.rows(); ++i)
-    {
-      double dist=Distortion(i,grad_size,WUV);
-      if (dist > maxD)
-        maxD=dist;
-
-      double absLap=fabs(LaplaceDistortion(i, grad_size,WUV));
-      if (absLap > maxL)
-        maxL = absLap;
-
-      double stiffDelta = std::min(c * absLap, d);
-
-      Handle_Stiffness[i]+=stiffDelta;
-    }
-  }
-  printf("Maximum Distorsion %4.4f \n",maxD);
-  printf("Maximum Laplacian %4.4f \n",maxL);
-  return flipped;
-}
-
-template <typename DerivedV, typename DerivedF, typename DerivedU>
-IGL_INLINE bool igl::MIQ_class<DerivedV, DerivedF, DerivedU>::IsFlipped(const Eigen::Vector2d &uv0,
-                                                                    const Eigen::Vector2d &uv1,
-                                                                    const Eigen::Vector2d &uv2)
-{
-  Eigen::Vector2d e0 = (uv1-uv0);
-  Eigen::Vector2d e1 = (uv2-uv0);
-
-  double Area = e0(0)*e1(1) - e0(1)*e1(0);
-  return (Area<=0);
-}
-
-template <typename DerivedV, typename DerivedF, typename DerivedU>
-IGL_INLINE bool igl::MIQ_class<DerivedV, DerivedF, DerivedU>::IsFlipped(const int i, const Eigen::MatrixXd& WUV)
-{
-  Eigen::Vector2d uv0,uv1,uv2;
-  uv0 << WUV(i,0), WUV(i,1);
-  uv1 << WUV(i,2), WUV(i,3);
-  uv2 << WUV(i,4), WUV(i,5);
-
-  return (IsFlipped(uv0,uv1,uv2));
-}
-
-
-
-
-template <typename DerivedV, typename DerivedF, typename DerivedU>
-IGL_INLINE void igl::miq(const Eigen::PlainObjectBase<DerivedV> &V,
-                         const Eigen::PlainObjectBase<DerivedF> &F,
-                         const Eigen::PlainObjectBase<DerivedV> &PD1_combed,
-                         const Eigen::PlainObjectBase<DerivedV> &PD2_combed,
-                        //  const Eigen::PlainObjectBase<DerivedV> &BIS1_combed,
-                        //  const Eigen::PlainObjectBase<DerivedV> &BIS2_combed,
-                         const Eigen::Matrix<int, Eigen::Dynamic, 3> &Handle_MMatch,
-                         const Eigen::Matrix<int, Eigen::Dynamic, 1> &Handle_Singular,
-                        //  const Eigen::Matrix<int, Eigen::Dynamic, 1> &Handle_SingularDegree,
-                         const Eigen::Matrix<int, Eigen::Dynamic, 3> &Handle_Seams,
-                         Eigen::PlainObjectBase<DerivedU> &UV,
-                         Eigen::PlainObjectBase<DerivedF> &FUV,
-                         double GradientSize,
-                         double Stiffness,
-                         bool DirectRound,
-                         int iter,
-                         int localIter,
-                         bool DoRound,
-                         bool SingularityRound,
-                         std::vector<int> roundVertices,
-                         std::vector<std::vector<int> > hardFeatures)
-{
-  GradientSize = GradientSize/(V.colwise().maxCoeff()-V.colwise().minCoeff()).norm();
-
-  igl::MIQ_class<DerivedV, DerivedF, DerivedU> miq(V,
-                                                   F,
-                                                   PD1_combed,
-                                                   PD2_combed,
-                                                  //  BIS1_combed,
-                                                  //  BIS2_combed,
-                                                   Handle_MMatch,
-                                                   Handle_Singular,
-                                                  //  Handle_SingularDegree,
-                                                   Handle_Seams,
-                                                   UV,
-                                                   FUV,
-                                                   GradientSize,
-                                                   Stiffness,
-                                                   DirectRound,
-                                                   iter,
-                                                   localIter,
-                                                   DoRound,
-                                                   SingularityRound,
-                                                   roundVertices,
-                                                   hardFeatures);
-
-  miq.extractUV(UV,FUV);
-}
-
-template <typename DerivedV, typename DerivedF, typename DerivedU>
-IGL_INLINE void igl::miq(const Eigen::PlainObjectBase<DerivedV> &V,
-                         const Eigen::PlainObjectBase<DerivedF> &F,
-                         const Eigen::PlainObjectBase<DerivedV> &PD1,
-                         const Eigen::PlainObjectBase<DerivedV> &PD2,
-                         Eigen::PlainObjectBase<DerivedU> &UV,
-                         Eigen::PlainObjectBase<DerivedF> &FUV,
-                         double GradientSize,
-                         double Stiffness,
-                         bool DirectRound,
-                         int iter,
-                         int localIter,
-                         bool DoRound,
-                         bool SingularityRound,
-                         std::vector<int> roundVertices,
-                         std::vector<std::vector<int> > hardFeatures)
-{
-  // Eigen::MatrixXd PD2i = PD2;
-  // if (PD2i.size() == 0)
-  // {
-    // Eigen::MatrixXd B1, B2, B3;
-    // igl::local_basis(V,F,B1,B2,B3);
-    // PD2i = igl::rotate_vectors(V,Eigen::VectorXd::Constant(1,M_PI/2),B1,B2);
-  // }
-
-  Eigen::PlainObjectBase<DerivedV> BIS1, BIS2;
-  igl::compute_frame_field_bisectors(V, F, PD1, PD2, BIS1, BIS2);
-
-  Eigen::PlainObjectBase<DerivedV> BIS1_combed, BIS2_combed;
-  igl::comb_cross_field(V, F, BIS1, BIS2, BIS1_combed, BIS2_combed);
-
-  Eigen::Matrix<int, Eigen::Dynamic, 3> Handle_MMatch;
-  igl::cross_field_missmatch(V, F, BIS1_combed, BIS2_combed, true, Handle_MMatch);
-
-  Eigen::Matrix<int, Eigen::Dynamic, 1> isSingularity, singularityIndex;
-  igl::find_cross_field_singularities(V, F, Handle_MMatch, isSingularity, singularityIndex);
-
-  Eigen::Matrix<int, Eigen::Dynamic, 3> Handle_Seams;
-  igl::cut_mesh_from_singularities(V, F, Handle_MMatch, Handle_Seams);
-
-  Eigen::PlainObjectBase<DerivedV> PD1_combed, PD2_combed;
-  igl::comb_frame_field(V, F, PD1, PD2, BIS1_combed, BIS2_combed, PD1_combed, PD2_combed);
-
-  igl::miq(V,
-           F,
-           PD1_combed,
-           PD2_combed,
-          //  BIS1_combed,
-          //  BIS2_combed,
-           Handle_MMatch,
-           isSingularity,
-          //  singularityIndex,
-           Handle_Seams,
-           UV,
-           FUV,
-           GradientSize,
-           Stiffness,
-           DirectRound,
-           iter,
-           localIter,
-           DoRound,
-           SingularityRound,
-           roundVertices,
-           hardFeatures);
-
-}
-
-#ifdef IGL_STATIC_LIBRARY
-// Explicit template specialization
-// template void igl::miq<Eigen::Matrix<double, -1, 3, 0, -1, 3>, Eigen::Matrix<int, -1, 3, 0, -1, 3>, Eigen::Matrix<double, -1, 2, 0, -1, 2> >(Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 3, 0, -1, 3> > const&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 3, 0, -1, 3> > const&, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 3, 0, -1, 3> > const&, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 3, 0, -1, 3> > const&, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 2, 0, -1, 2> >&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 3, 0, -1, 3> >&, double, double, bool, int, int, bool, std::__1::vector<int, std::__1::allocator<int> >, std::__1::vector<std::__1::vector<int, std::__1::allocator<int> >, std::__1::allocator<std::__1::vector<int, std::__1::allocator<int> > > >);
-// template void igl::miq<Eigen::Matrix<double, -1, 3, 0, -1, 3>, Eigen::Matrix<int, -1, 3, 0, -1, 3>, Eigen::Matrix<double, -1, 2, 0, -1, 2> >(Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 3, 0, -1, 3> > const&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 3, 0, -1, 3> > const&, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 3, 0, -1, 3> > const&, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 3, 0, -1, 3> > const&, Eigen::Matrix<int, -1, 3, 0, -1, 3> const&, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 2, 0, -1, 2> >&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 3, 0, -1, 3> >&, double, double, bool, int, int, bool, std::__1::vector<int, std::__1::allocator<int> >, std::__1::vector<std::__1::vector<int, std::__1::allocator<int> >, std::__1::allocator<std::__1::vector<int, std::__1::allocator<int> > > >);
-//template void igl::miq<Eigen::Matrix<double, -1, 3, 0, -1, 3>, Eigen::Matrix<int, -1, 3, 0, -1, 3>, Eigen::Matrix<double, -1, 2, 0, -1, 2> >(Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 3, 0, -1, 3> > const&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 3, 0, -1, 3> > const&, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 3, 0, -1, 3> > const&, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 3, 0, -1, 3> > const&, Eigen::Matrix<int, -1, 3, 0, -1, 3> const&, Eigen::Matrix<int, -1, 1, 0, -1, 1> const&, Eigen::Matrix<int, -1, 3, 0, -1, 3> const&, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 2, 0, -1, 2> >&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 3, 0, -1, 3> >&, double, double, bool, int, int, bool, std::__1::vector<int, std::__1::allocator<int> >, std::__1::vector<std::__1::vector<int, std::__1::allocator<int> >, std::__1::allocator<std::__1::vector<int, std::__1::allocator<int> > > >);
-#endif

+ 1 - 0
include/igl/comiso/miq.cpp.REMOVED.git-id

@@ -0,0 +1 @@
+afbb44c112debcdd5d73337d16f4014d2d1ba373

+ 1 - 0
include/igl/cut_mesh_from_singularities.cpp

@@ -197,4 +197,5 @@ IGL_INLINE void igl::cut_mesh_from_singularities(const Eigen::PlainObjectBase<De
 // Explicit template specialization
 template void igl::cut_mesh_from_singularities<Eigen::Matrix<double, -1, 3, 0, -1, 3>, Eigen::Matrix<int, -1, 3, 0, -1, 3>, Eigen::Matrix<int, -1, -1, 0, -1, -1>, Eigen::Matrix<int, -1, -1, 0, -1, -1> >(Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 3, 0, -1, 3> > const&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 3, 0, -1, 3> > const&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> > const&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> >&);
 template void igl::cut_mesh_from_singularities<Eigen::Matrix<double, -1, 3, 0, -1, 3>, Eigen::Matrix<int, -1, 3, 0, -1, 3>, Eigen::Matrix<double, -1, 3, 0, -1, 3>, Eigen::Matrix<int, -1, -1, 0, -1, -1> >(Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 3, 0, -1, 3> > const&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 3, 0, -1, 3> > const&, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 3, 0, -1, 3> > const&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> >&);
+template void igl::cut_mesh_from_singularities<Eigen::Matrix<double, -1, 3, 0, -1, 3>, Eigen::Matrix<int, -1, 3, 0, -1, 3>, Eigen::Matrix<int, -1, 3, 0, -1, 3>, Eigen::Matrix<int, -1, 3, 0, -1, 3> >(Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 3, 0, -1, 3> > const&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 3, 0, -1, 3> > const&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 3, 0, -1, 3> > const&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 3, 0, -1, 3> >&);
 #endif

+ 5 - 4
include/igl/embree/ambient_occlusion.cpp

@@ -1,9 +1,9 @@
 // This file is part of libigl, a simple c++ geometry processing library.
-// 
+//
 // Copyright (C) 2013 Alec Jacobson <alecjacobson@gmail.com>
-// 
-// This Source Code Form is subject to the terms of the Mozilla Public License 
-// v. 2.0. If a copy of the MPL was not distributed with this file, You can 
+//
+// This Source Code Form is subject to the terms of the Mozilla Public License
+// v. 2.0. If a copy of the MPL was not distributed with this file, You can
 // obtain one at http://mozilla.org/MPL/2.0/.
 #include "ambient_occlusion.h"
 #include "EmbreeIntersector.h"
@@ -81,4 +81,5 @@ IGL_INLINE void igl::ambient_occlusion(
 template void igl::ambient_occlusion<Eigen::Matrix<double, -1, -1, 0, -1, -1>, Eigen::Matrix<double, -1, -1, 0, -1, -1>, Eigen::Matrix<double, -1, 1, 0, -1, 1> >(igl::EmbreeIntersector const&, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1, 0, -1, -1> > const&, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1, 0, -1, -1> > const&, int, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1, 0, -1, 1> >&);
 template void igl::ambient_occlusion<Eigen::Matrix<double, 1, 3, 1, 1, 3>, Eigen::Matrix<double, 1, 3, 1, 1, 3>, Eigen::Matrix<double, -1, 1, 0, -1, 1> >(igl::EmbreeIntersector const&, Eigen::PlainObjectBase<Eigen::Matrix<double, 1, 3, 1, 1, 3> > const&, Eigen::PlainObjectBase<Eigen::Matrix<double, 1, 3, 1, 1, 3> > const&, int, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1, 0, -1, 1> >&);
 template void igl::ambient_occlusion<Eigen::Matrix<double, -1, -1, 0, -1, -1>, Eigen::Matrix<int, -1, -1, 0, -1, -1>, Eigen::Matrix<double, -1, -1, 0, -1, -1>, Eigen::Matrix<double, -1, -1, 0, -1, -1>, Eigen::Matrix<double, -1, 1, 0, -1, 1> >(Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1, 0, -1, -1> > const&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> > const&, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1, 0, -1, -1> > const&, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1, 0, -1, -1> > const&, int, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1, 0, -1, 1> >&);
+template void igl::ambient_occlusion<Eigen::Matrix<double, -1, 3, 0, -1, 3>, Eigen::Matrix<int, -1, 3, 0, -1, 3>, Eigen::Matrix<double, -1, 3, 0, -1, 3>, Eigen::Matrix<double, -1, 3, 0, -1, 3>, Eigen::Matrix<double, -1, 1, 0, -1, 1> >(Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 3, 0, -1, 3> > const&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 3, 0, -1, 3> > const&, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 3, 0, -1, 3> > const&, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 3, 0, -1, 3> > const&, int, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1, 0, -1, 1> >&);
 #endif

+ 5 - 0
include/igl/matlab_format.cpp

@@ -120,4 +120,9 @@ template Eigen::WithFormat<Eigen::Matrix<float, 2, 2, 1, 2, 2> > const igl::matl
 template Eigen::WithFormat<Eigen::Matrix<float, -1, -1, 0, -1, -1> > const igl::matlab_format<Eigen::Matrix<float, -1, -1, 0, -1, -1> >(Eigen::PlainObjectBase<Eigen::Matrix<float, -1, -1, 0, -1, -1> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> >);
 template Eigen::WithFormat<Eigen::Matrix<double, 3, 3, 1, 3, 3> > const igl::matlab_format<Eigen::Matrix<double, 3, 3, 1, 3, 3> >(Eigen::PlainObjectBase<Eigen::Matrix<double, 3, 3, 1, 3, 3> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> >);
 template Eigen::WithFormat<Eigen::Array<double, -1, 1, 0, -1, 1> > const igl::matlab_format<Eigen::Array<double, -1, 1, 0, -1, 1> >(Eigen::PlainObjectBase<Eigen::Array<double, -1, 1, 0, -1, 1> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >);
+template Eigen::WithFormat<Eigen::Matrix<double, -1, 3, 0, -1, 3> > const igl::matlab_format<Eigen::Matrix<double, -1, 3, 0, -1, 3> >(Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 3, 0, -1, 3> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >);
+template Eigen::WithFormat<Eigen::Matrix<double, 1, 2, 1, 1, 2> > const igl::matlab_format<Eigen::Matrix<double, 1, 2, 1, 1, 2> >(Eigen::PlainObjectBase<Eigen::Matrix<double, 1, 2, 1, 1, 2> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >);
+template Eigen::WithFormat<Eigen::Matrix<double, 1, 3, 1, 1, 3> > const igl::matlab_format<Eigen::Matrix<double, 1, 3, 1, 1, 3> >(Eigen::PlainObjectBase<Eigen::Matrix<double, 1, 3, 1, 1, 3> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >);
+template Eigen::WithFormat<Eigen::Matrix<int, -1, 2, 0, -1, 2> > const igl::matlab_format<Eigen::Matrix<int, -1, 2, 0, -1, 2> >(Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 2, 0, -1, 2> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >);
+template Eigen::WithFormat<Eigen::Matrix<int, -1, 3, 0, -1, 3> > const igl::matlab_format<Eigen::Matrix<int, -1, 3, 0, -1, 3> >(Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 3, 0, -1, 3> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >);
 #endif

+ 1 - 0
include/igl/per_corner_normals.cpp

@@ -102,4 +102,5 @@ template void igl::per_corner_normals<Eigen::Matrix<double, -1, -1, 0, -1, -1>,
 template void igl::per_corner_normals<Eigen::Matrix<double, -1, 3, 1, -1, 3>, Eigen::Matrix<unsigned int, -1, -1, 1, -1, -1>, unsigned int>(Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 3, 1, -1, 3> > const&, Eigen::PlainObjectBase<Eigen::Matrix<unsigned int, -1, -1, 1, -1, -1> > const&, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 3, 1, -1, 3> > const&, std::vector<std::vector<unsigned int, std::allocator<unsigned int> >, std::allocator<std::vector<unsigned int, std::allocator<unsigned int> > > > const&, double, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 3, 1, -1, 3> >&);
 template void igl::per_corner_normals<Eigen::Matrix<double, -1, -1, 0, -1, -1>, Eigen::Matrix<int, -1, -1, 0, -1, -1>, Eigen::Matrix<double, -1, -1, 0, -1, -1>, Eigen::Matrix<double, -1, -1, 0, -1, -1> >(Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1, 0, -1, -1> > const&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> > const&, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1, 0, -1, -1> > const&, double, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1, 0, -1, -1> >&);
 template void igl::per_corner_normals<Eigen::Matrix<double, -1, 3, 0, -1, 3>, Eigen::Matrix<int, -1, 3, 0, -1, 3>, int>(Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 3, 0, -1, 3> > const&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 3, 0, -1, 3> > const&, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 3, 0, -1, 3> > const&, std::vector<std::vector<int, std::allocator<int> >, std::allocator<std::vector<int, std::allocator<int> > > > const&, double, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 3, 0, -1, 3> >&);
+template void igl::per_corner_normals<Eigen::Matrix<double, -1, 3, 0, -1, 3>, Eigen::Matrix<int, -1, 3, 0, -1, 3> >(Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 3, 0, -1, 3> > const&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 3, 0, -1, 3> > const&, double, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 3, 0, -1, 3> >&);
 #endif

+ 17 - 17
include/igl/readOBJ.cpp

@@ -1,9 +1,9 @@
 // This file is part of libigl, a simple c++ geometry processing library.
-// 
+//
 // Copyright (C) 2013 Alec Jacobson <alecjacobson@gmail.com>
-// 
-// This Source Code Form is subject to the terms of the Mozilla Public License 
-// v. 2.0. If a copy of the MPL was not distributed with this file, You can 
+//
+// This Source Code Form is subject to the terms of the Mozilla Public License
+// v. 2.0. If a copy of the MPL was not distributed with this file, You can
 // obtain one at http://mozilla.org/MPL/2.0/.
 #include "readOBJ.h"
 
@@ -15,7 +15,7 @@
 
 template <typename Scalar, typename Index>
 IGL_INLINE bool igl::readOBJ(
-  const std::string obj_file_name, 
+  const std::string obj_file_name,
   std::vector<std::vector<Scalar > > & V,
   std::vector<std::vector<Scalar > > & TC,
   std::vector<std::vector<Scalar > > & N,
@@ -52,7 +52,7 @@ IGL_INLINE bool igl::readOBJ(
 
   char line[IGL_LINE_MAX];
   int line_no = 1;
-  while (fgets(line, IGL_LINE_MAX, obj_file) != NULL) 
+  while (fgets(line, IGL_LINE_MAX, obj_file) != NULL)
   {
     char type[IGL_LINE_MAX];
     // Read first word containing type
@@ -63,12 +63,12 @@ IGL_INLINE bool igl::readOBJ(
       if(type == v)
       {
         double x[4];
-        int count = 
+        int count =
         sscanf(l,"%lf %lf %lf %lf\n",&x[0],&x[1],&x[2],&x[3]);
         if(count != 3 && count != 4)
         {
-          fprintf(stderr, 
-                  "Error: readOBJ() vertex on line %d should have 3 or 4 coordinates", 
+          fprintf(stderr,
+                  "Error: readOBJ() vertex on line %d should have 3 or 4 coordinates",
                   line_no);
           fclose(obj_file);
           return false;
@@ -82,12 +82,12 @@ IGL_INLINE bool igl::readOBJ(
       }else if(type == vn)
       {
         double x[3];
-        int count = 
+        int count =
         sscanf(l,"%lf %lf %lf\n",&x[0],&x[1],&x[2]);
         if(count != 3)
         {
-          fprintf(stderr, 
-                  "Error: readOBJ() normal on line %d should have 3 coordinates", 
+          fprintf(stderr,
+                  "Error: readOBJ() normal on line %d should have 3 coordinates",
                   line_no);
           fclose(obj_file);
           return false;
@@ -101,12 +101,12 @@ IGL_INLINE bool igl::readOBJ(
       }else if(type == vt)
       {
         double x[3];
-        int count = 
+        int count =
         sscanf(l,"%lf %lf %lf\n",&x[0],&x[1],&x[2]);
         if(count != 2 && count != 3)
         {
-          fprintf(stderr, 
-                  "Error: readOBJ() vertex on line %d should have 2 or 3 coordinates (%d)", 
+          fprintf(stderr,
+                  "Error: readOBJ() vertex on line %d should have 2 or 3 coordinates (%d)",
                   line_no,count);
           fclose(obj_file);
           return false;
@@ -174,7 +174,7 @@ IGL_INLINE bool igl::readOBJ(
           fclose(obj_file);
           return false;
         }
-      }else if(strlen(type) >= 1 && (type[0] == '#' || 
+      }else if(strlen(type) >= 1 && (type[0] == '#' ||
             type[0] == 'g'  ||
             type[0] == 's'  ||
             strcmp("usemtl",type)==0 ||
@@ -205,7 +205,7 @@ IGL_INLINE bool igl::readOBJ(
 
 template <typename Scalar, typename Index>
 IGL_INLINE bool igl::readOBJ(
-  const std::string obj_file_name, 
+  const std::string obj_file_name,
   std::vector<std::vector<Scalar > > & V,
   std::vector<std::vector<Index > > & F)
 {

+ 1 - 0
include/igl/slice.cpp

@@ -206,4 +206,5 @@ template void igl::slice<Eigen::Matrix<double, -1, 3, 0, -1, 3> >(Eigen::Matrix<
 template Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1, 0, -1, 1> > igl::slice<Eigen::Matrix<double, -1, 1, 0, -1, 1> >(Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1, 0, -1, 1> > const&, Eigen::Matrix<int, -1, 1, 0, -1, 1> const&);
 template Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 3, 0, -1, 3> > igl::slice<Eigen::Matrix<double, -1, 3, 0, -1, 3> >(Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 3, 0, -1, 3> > const&, Eigen::Matrix<int, -1, 1, 0, -1, 1> const&, int);
 template Eigen::PlainObjectBase<Eigen::Matrix<double, 1, -1, 1, 1, -1> > igl::slice<Eigen::Matrix<double, 1, -1, 1, 1, -1> >(Eigen::PlainObjectBase<Eigen::Matrix<double, 1, -1, 1, 1, -1> > const&, Eigen::Matrix<int, -1, 1, 0, -1, 1> const&, int);
+template Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 3, 0, -1, 3> > igl::slice<Eigen::Matrix<int, -1, 3, 0, -1, 3> >(Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 3, 0, -1, 3> > const&, Eigen::Matrix<int, -1, 1, 0, -1, 1> const&, int);
 #endif

+ 2 - 0
include/igl/slice_into.cpp

@@ -135,4 +135,6 @@ template void igl::slice_into<Eigen::Matrix<double, -1, 1, 0, -1, 1> >(Eigen::Pl
 template void igl::slice_into<Eigen::Matrix<double, -1, -1, 0, -1, -1> >(Eigen::Matrix<double, -1, -1, 0, -1, -1> const&, Eigen::Matrix<int, -1, 1, 0, -1, 1> const&, int, Eigen::Matrix<double, -1, -1, 0, -1, -1>&);
 template void igl::slice_into<Eigen::Matrix<int, -1, 1, 0, -1, 1> >(Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1, 0, -1, 1> > const&, Eigen::Matrix<int, -1, 1, 0, -1, 1> const&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1, 0, -1, 1> >&);
 template void igl::slice_into<Eigen::Matrix<double, -1, 1, 0, -1, 1> >(Eigen::Matrix<double, -1, 1, 0, -1, 1> const&, Eigen::Matrix<int, -1, 1, 0, -1, 1> const&, int, Eigen::Matrix<double, -1, 1, 0, -1, 1>&);
+template void igl::slice_into<Eigen::SparseMatrix<double, 0, int> >(Eigen::SparseMatrix<double, 0, int> const&, Eigen::Matrix<int, -1, 1, 0, -1, 1> const&, int, Eigen::SparseMatrix<double, 0, int>&);
+template void igl::slice_into<Eigen::Matrix<int, -1, 1, 0, -1, 1> >(Eigen::Matrix<int, -1, 1, 0, -1, 1> const&, Eigen::Matrix<int, -1, 1, 0, -1, 1> const&, int, Eigen::Matrix<int, -1, 1, 0, -1, 1>&);
 #endif

+ 5 - 4
include/igl/sort.cpp

@@ -1,9 +1,9 @@
 // This file is part of libigl, a simple c++ geometry processing library.
-// 
+//
 // Copyright (C) 2013 Alec Jacobson <alecjacobson@gmail.com>
-// 
-// This Source Code Form is subject to the terms of the Mozilla Public License 
-// v. 2.0. If a copy of the MPL was not distributed with this file, You can 
+//
+// This Source Code Form is subject to the terms of the Mozilla Public License
+// v. 2.0. If a copy of the MPL was not distributed with this file, You can
 // obtain one at http://mozilla.org/MPL/2.0/.
 #include "sort.h"
 
@@ -222,4 +222,5 @@ template void igl::sort<Eigen::Matrix<int, -1, -1, 0, -1, -1>, Eigen::Matrix<int
 template void igl::sort<Eigen::Matrix<int, -1, 2, 0, -1, 2>, Eigen::Matrix<int, -1, -1, 0, -1, -1>, Eigen::Matrix<int, -1, -1, 0, -1, -1> >(Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 2, 0, -1, 2> > const&, int, bool, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> >&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> >&);
 template void igl::sort<Eigen::Matrix<int, -1, 1, 0, -1, 1>, Eigen::Matrix<int, -1, 1, 0, -1, 1> >(Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1, 0, -1, 1> > const&, int, bool, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1, 0, -1, 1> >&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1, 0, -1, 1> >&);
 template void igl::sort<Eigen::Matrix<double, -1, 1, 0, -1, 1>, Eigen::Matrix<double, -1, 1, 0, -1, 1>, Eigen::Matrix<int, -1, 1, 0, -1, 1> >(Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1, 0, -1, 1> > const&, int, bool, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1, 0, -1, 1> >&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1, 0, -1, 1> >&);
+template void igl::sort_new<Eigen::Matrix<int, 1, 6, 1, 1, 6>, Eigen::Matrix<int, 1, 6, 1, 1, 6>, Eigen::Matrix<int, 1, 6, 1, 1, 6> >(Eigen::PlainObjectBase<Eigen::Matrix<int, 1, 6, 1, 1, 6> > const&, int, bool, Eigen::PlainObjectBase<Eigen::Matrix<int, 1, 6, 1, 1, 6> >&, Eigen::PlainObjectBase<Eigen::Matrix<int, 1, 6, 1, 1, 6> >&);
 #endif

+ 1 - 0
include/igl/sparse.cpp

@@ -111,4 +111,5 @@ template Eigen::SparseMatrix<Eigen::Matrix<double, -1, -1, 0, -1, -1>::Scalar, 0
 template Eigen::SparseMatrix<Eigen::Matrix<double, -1, 1, 0, -1, 1>::Scalar, 0, int> igl::sparse<Eigen::Matrix<double, -1, 1, 0, -1, 1> >(Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1, 0, -1, 1> > const&);
 template void igl::sparse<Eigen::Matrix<int, -1, 1, 0, -1, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1, 0, -1, 1> >, double>(Eigen::Matrix<int, -1, 1, 0, -1, 1> const&, Eigen::Matrix<int, -1, 1, 0, -1, 1> const&, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1, 0, -1, 1> > const&, unsigned long, unsigned long, Eigen::SparseMatrix<double, 0, int>&);
 template void igl::sparse<Eigen::Matrix<int, -1, 1, 0, -1, 1>, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1, 0, -1, 1> >, double>(Eigen::Matrix<int, -1, 1, 0, -1, 1> const&, Eigen::Matrix<int, -1, 1, 0, -1, 1> const&, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1, 0, -1, 1> > const&, Eigen::SparseMatrix<double, 0, int>&);
+template void igl::sparse<Eigen::Matrix<int, -1, 1, 0, -1, 1>, Eigen::Matrix<double, -1, 1, 0, -1, 1>, double>(Eigen::Matrix<int, -1, 1, 0, -1, 1> const&, Eigen::Matrix<int, -1, 1, 0, -1, 1> const&, Eigen::Matrix<double, -1, 1, 0, -1, 1> const&, Eigen::SparseMatrix<double, 0, int>&);
 #endif

+ 14 - 13
include/igl/writeOBJ.cpp

@@ -1,9 +1,9 @@
 // This file is part of libigl, a simple c++ geometry processing library.
-// 
+//
 // Copyright (C) 2013 Alec Jacobson <alecjacobson@gmail.com>
-// 
-// This Source Code Form is subject to the terms of the Mozilla Public License 
-// v. 2.0. If a copy of the MPL was not distributed with this file, You can 
+//
+// This Source Code Form is subject to the terms of the Mozilla Public License
+// v. 2.0. If a copy of the MPL was not distributed with this file, You can
 // obtain one at http://mozilla.org/MPL/2.0/.
 #include "writeOBJ.h"
 
@@ -32,7 +32,7 @@ IGL_INLINE bool igl::writeOBJ(
   {
     s << "v " << V(i,0) << " " << V(i,1) << " " << V(i,2) << std::endl;
   }
-  
+
   for(int i=0;i<(int)F.rows();++i)
   {
     s << "f ";
@@ -46,7 +46,7 @@ IGL_INLINE bool igl::writeOBJ(
     }
     s<<std::endl;
   }
-  
+
   s.close();
   return true;
 }
@@ -65,7 +65,7 @@ IGL_INLINE bool igl::writeOBJ(
   if(NULL==obj_file)
   {
     printf("IOError: %s could not be opened for writing...",str.c_str());
-    return false;                                              
+    return false;
   }
   // Loop over V
   for(int i = 0;i<(int)V.rows();i++)
@@ -77,7 +77,7 @@ IGL_INLINE bool igl::writeOBJ(
       );
   }
   bool write_N = CN.rows() >0;
-  
+
   if(write_N)
   {
     for(int i = 0;i<(int)CN.rows();i++)
@@ -90,9 +90,9 @@ IGL_INLINE bool igl::writeOBJ(
     }
     fprintf(obj_file,"\n");
   }
-  
+
   bool write_texture_coords = TC.rows() >0;
-  
+
   if(write_texture_coords)
   {
     for(int i = 0;i<(int)TC.rows();i++)
@@ -101,7 +101,7 @@ IGL_INLINE bool igl::writeOBJ(
     }
     fprintf(obj_file,"\n");
   }
-  
+
   // loop over F
   for(int i = 0;i<(int)F.rows();++i)
   {
@@ -110,7 +110,7 @@ IGL_INLINE bool igl::writeOBJ(
     {
       // OBJ is 1-indexed
       fprintf(obj_file," %u",F(i,j)+1);
-      
+
       if(write_texture_coords)
         fprintf(obj_file,"/%u",FTC(i,j)+1);
       if(write_N)
@@ -124,7 +124,7 @@ IGL_INLINE bool igl::writeOBJ(
     fprintf(obj_file,"\n");
   }
   fclose(obj_file);
-  return true;  
+  return true;
 }
 #ifdef IGL_STATIC_LIBRARY
 // Explicit template specialization
@@ -134,4 +134,5 @@ template bool igl::writeOBJ<Eigen::Matrix<double, -1, 3, 1, -1, 3>, Eigen::Matri
 template bool igl::writeOBJ<Eigen::Matrix<float, -1, 3, 1, -1, 3>, Eigen::Matrix<unsigned int, -1, -1, 1, -1, -1>, Eigen::Matrix<float, -1, 2, 1, -1, 2> >(std::basic_string<char, std::char_traits<char>, std::allocator<char> >, Eigen::PlainObjectBase<Eigen::Matrix<float, -1, 3, 1, -1, 3> > const&, Eigen::PlainObjectBase<Eigen::Matrix<unsigned int, -1, -1, 1, -1, -1> > const&, Eigen::PlainObjectBase<Eigen::Matrix<float, -1, 3, 1, -1, 3> > const&, Eigen::PlainObjectBase<Eigen::Matrix<unsigned int, -1, -1, 1, -1, -1> > const&, Eigen::PlainObjectBase<Eigen::Matrix<float, -1, 2, 1, -1, 2> > const&, Eigen::PlainObjectBase<Eigen::Matrix<unsigned int, -1, -1, 1, -1, -1> > const&);
 template bool igl::writeOBJ<Eigen::Matrix<double, -1, -1, 0, -1, -1>, Eigen::Matrix<int, -1, -1, 0, -1, -1>, Eigen::Matrix<double, -1, -1, 0, -1, -1> >(std::basic_string<char, std::char_traits<char>, std::allocator<char> >, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1, 0, -1, -1> > const&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> > const&, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1, 0, -1, -1> > const&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> > const&, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1, 0, -1, -1> > const&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> > const&);
 template bool igl::writeOBJ<Eigen::Matrix<double, -1, -1, 0, -1, -1>, Eigen::Matrix<int, -1, -1, 0, -1, -1>, Eigen::Matrix<double, -1, 2, 0, -1, 2> >(std::basic_string<char, std::char_traits<char>, std::allocator<char> >, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1, 0, -1, -1> > const&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> > const&, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1, 0, -1, -1> > const&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> > const&, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 2, 0, -1, 2> > const&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1, 0, -1, -1> > const&);
+template bool igl::writeOBJ<Eigen::Matrix<double, -1, 3, 0, -1, 3>, Eigen::Matrix<int, -1, 3, 0, -1, 3> >(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 3, 0, -1, 3> > const&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 3, 0, -1, 3> > const&);
 #endif

+ 6 - 4
include/igl/writePLY.cpp

@@ -6,6 +6,8 @@
 // v. 2.0. If a copy of the MPL was not distributed with this file, You can
 // obtain one at http://mozilla.org/MPL/2.0/.
 #include "writePLY.h"
+#include <vector>
+
 #include <igl/ply.h>
 
 template <
@@ -36,7 +38,7 @@ IGL_INLINE bool igl::writePLY(
     int *verts;              /* vertex index list */
   } Face;
 
-  PlyProperty vert_props[] = 
+  PlyProperty vert_props[] =
   { /* list of property information for a vertex */
     {"x", PLY_DOUBLE, PLY_DOUBLE, offsetof(Vertex,x), 0, 0, 0, 0},
     {"y", PLY_DOUBLE, PLY_DOUBLE, offsetof(Vertex,y), 0, 0, 0, 0},
@@ -48,7 +50,7 @@ IGL_INLINE bool igl::writePLY(
     {"t", PLY_DOUBLE, PLY_DOUBLE, offsetof(Vertex,t), 0, 0, 0, 0},
   };
 
-  PlyProperty face_props[] = 
+  PlyProperty face_props[] =
   { /* list of property information for a face */
     {"vertex_indices", PLY_INT, PLY_INT, offsetof(Face,verts),
       1, PLY_UCHAR, PLY_UCHAR, offsetof(Face,nverts)},
@@ -90,7 +92,7 @@ IGL_INLINE bool igl::writePLY(
   {
     return false;
   }
-  PlyFile * ply = ply_write(fp, 2,elem_names, 
+  PlyFile * ply = ply_write(fp, 2,elem_names,
       (ascii ? PLY_ASCII : PLY_BINARY_LE));
   if(ply==NULL)
   {
@@ -101,7 +103,7 @@ IGL_INLINE bool igl::writePLY(
   plist.push_back(vert_props[0]);
   plist.push_back(vert_props[1]);
   plist.push_back(vert_props[2]);
-  if (has_normals) 
+  if (has_normals)
   {
     plist.push_back(vert_props[3]);
     plist.push_back(vert_props[4]);