libigl_Martin/include/igl/min_quad_with_fixed.cpp

// This file is part of libigl, a simple c++ geometry processing library.
// 
// Copyright (C) 2013 Alec Jacobson <alecjacobson@gmail.com>
// 
// This Source Code Form is subject to the terms of the Mozilla Public License 
// v. 2.0. If a copy of the MPL was not distributed with this file, You can 
// obtain one at http://mozilla.org/MPL/2.0/.
#include "min_quad_with_fixed.h"

#include "slice.h"
#include "is_symmetric.h"
#include "find.h"
#include "sparse.h"
#include "repmat.h"
#include "lu_lagrange.h"
#include "full.h"
#include "matlab_format.h"
#include "EPS.h"
#include "cat.h"

//#include <Eigen/SparseExtra>
// Bug in unsupported/Eigen/SparseExtra needs iostream first
#include <iostream>
#include <unsupported/Eigen/SparseExtra>
#include <cassert>
#include <cstdio>
#include <iostream>

template <typename T, typename Derivedknown>
IGL_INLINE bool igl::min_quad_with_fixed_precompute(
  const Eigen::SparseMatrix<T>& A,
  const Eigen::PlainObjectBase<Derivedknown> & known,
  const Eigen::SparseMatrix<T>& Aeq,
  const bool pd,
  min_quad_with_fixed_data<T> & data
  )
{
#define MIN_QUAD_WITH_FIXED_CPP_DEBUG
  using namespace Eigen;
  using namespace std;
  using namespace igl;
#ifdef MIN_QUAD_WITH_FIXED_CPP_DEBUG
  cout<<"    pre"<<endl;
#endif
  // number of rows
  int n = A.rows();
  // cache problem size
  data.n = n;

  int neq = Aeq.rows();
  // default is to have 0 linear equality constraints
  if(Aeq.size() != 0)
  {
    assert(n == Aeq.cols());
  }

  assert(A.rows() == n);
  assert(A.cols() == n);

  // number of known rows
  int kr = known.size();

  assert(kr == 0 || known.minCoeff() >= 0);
  assert(kr == 0 || known.maxCoeff() < n);
  assert(neq <= n);

  // cache known
  data.known = known;
  // get list of unknown indices
  data.unknown.resize(n-kr);
  std::vector<bool> unknown_mask;
  unknown_mask.resize(n,true);
  for(int i = 0;i<kr;i++)
  {
    unknown_mask[known(i)] = false;
  }
  int u = 0;
  for(int i = 0;i<n;i++)
  {
    if(unknown_mask[i])
    {
      data.unknown(u) = i;
      u++;
    }
  }
  // get list of lagrange multiplier indices
  data.lagrange.resize(neq);
  for(int i = 0;i<neq;i++)
  {
    data.lagrange(i) = n + i;
  }
  // cache unknown followed by lagrange indices
  data.unknown_lagrange.resize(data.unknown.size()+data.lagrange.size());
  data.unknown_lagrange << data.unknown, data.lagrange;

  SparseMatrix<T> Auu;
  slice(A,data.unknown,data.unknown,Auu);

  // Positive definiteness is *not* determined, rather it is given as a
  // parameter
  data.Auu_pd = pd;
  if(data.Auu_pd)
  {
    // PD implies symmetric
    data.Auu_sym = true;
    // This is an annoying assertion unless EPS can be chosen in a nicer way.
    //assert(is_symmetric(Auu,EPS<double>()));
    assert(is_symmetric(Auu,1.0));
  }else
  {
    // determine if A(unknown,unknown) is symmetric and/or positive definite
    data.Auu_sym = is_symmetric(Auu,EPS<double>());
  }

  // Determine number of linearly independent constraints
  int nc = 0;
  if(neq>0)
  {
#ifdef MIN_QUAD_WITH_FIXED_CPP_DEBUG
    cout<<"    qr"<<endl;
#endif
    // QR decomposition to determine row rank in Aequ
    slice(Aeq,data.unknown,2,data.Aequ);
    assert(data.Aequ.rows() == neq);
    assert(data.Aequ.cols() == data.unknown.size());
    data.AeqTQR.compute(data.Aequ.transpose().eval());
    cout<<endl<<matlab_format(SparseMatrix<T>(data.Aequ.transpose().eval()),"AeqT")<<endl<<endl;
    switch(data.AeqTQR.info())
    {
      case Eigen::Success:
        break;
      case Eigen::NumericalIssue:
        cerr<<"Error: Numerical issue."<<endl;
        return false;
      case Eigen::InvalidInput:
        cerr<<"Error: Invalid input."<<endl;
        return false;
      default:
        cerr<<"Error: Other."<<endl;
        return false;
    }
    nc = data.AeqTQR.rank();
    assert(nc<=neq);
    data.Aeq_li = nc == neq;
  }else
  {
    data.Aeq_li = true;
  }

  if(data.Aeq_li)
  {
#ifdef MIN_QUAD_WITH_FIXED_CPP_DEBUG
    cout<<"    Aeq_li=true"<<endl;
#endif
    // Append lagrange multiplier quadratic terms
    SparseMatrix<T> new_A;
    SparseMatrix<T> AeqT = Aeq.transpose();
    SparseMatrix<T> Z(neq,neq);
    // This is a bit slower. But why isn't cat fast?
    new_A = cat(1, cat(2,   A, AeqT ),
                   cat(2, Aeq,    Z ));

    // precompute RHS builders
    if(kr > 0)
    {
      SparseMatrix<T> Aulk,Akul;
      // Slow
      slice(new_A,data.unknown_lagrange,data.known,Aulk);
      //// This doesn't work!!!
      //data.preY = Aulk + Akul.transpose();
      // Slow
      if(data.Auu_sym)
      {
        data.preY = Aulk*2;
      }else
      {
        slice(new_A,data.known,data.unknown_lagrange,Akul);
        SparseMatrix<T> AkulT = Akul.transpose();
        data.preY = Aulk + AkulT;
      }
    }else
    {
      data.preY.resize(data.unknown_lagrange.size(),0);
    }

    // Positive definite and no equality constraints (Postive definiteness
    // implies symmetric)
#ifdef MIN_QUAD_WITH_FIXED_CPP_DEBUG
    cout<<"    factorize"<<endl;
#endif
    if(data.Auu_pd && neq == 0)
    {
#ifdef MIN_QUAD_WITH_FIXED_CPP_DEBUG
    cout<<"    llt"<<endl;
#endif
      data.llt.compute(Auu);
      switch(data.llt.info())
      {
        case Eigen::Success:
          break;
        case Eigen::NumericalIssue:
          cerr<<"Error: Numerical issue."<<endl;
          return false;
        default:
          cerr<<"Error: Other."<<endl;
          return false;
      }
      data.solver_type = min_quad_with_fixed_data<T>::LLT;
    }else
    {
#ifdef MIN_QUAD_WITH_FIXED_CPP_DEBUG
    cout<<"    ldlt"<<endl;
#endif
      // Either not PD or there are equality constraints
      SparseMatrix<T> NA;
      slice(new_A,data.unknown_lagrange,data.unknown_lagrange,NA);
      data.NA = NA;
      // Ideally we'd use LDLT but Eigen doesn't support positive semi-definite
      // matrices:
      // http://forum.kde.org/viewtopic.php?f=74&t=106962&p=291990#p291990
      if(data.Auu_sym && false)
      {
        data.ldlt.compute(NA);
        switch(data.ldlt.info())
        {
          case Eigen::Success:
            break;
          case Eigen::NumericalIssue:
            cerr<<"Error: Numerical issue."<<endl;
            return false;
          default:
            cerr<<"Error: Other."<<endl;
            return false;
        }
        data.solver_type = min_quad_with_fixed_data<T>::LDLT;
      }else
      {
#ifdef MIN_QUAD_WITH_FIXED_CPP_DEBUG
    cout<<"    lu"<<endl;
#endif
        // Resort to LU
        // Bottleneck >1/2
        data.lu.compute(NA);
        //std::cout<<"NA=["<<std::endl<<NA<<std::endl<<"];"<<std::endl;
        switch(data.lu.info())
        {
          case Eigen::Success:
            break;
          case Eigen::NumericalIssue:
            cerr<<"Error: Numerical issue."<<endl;
            return false;
          case Eigen::InvalidInput:
            cerr<<"Error: Invalid Input."<<endl;
            return false;
          default:
            cerr<<"Error: Other."<<endl;
            return false;
        }
        data.solver_type = min_quad_with_fixed_data<T>::LU;
      }
    }
  }else
  {
#ifdef MIN_QUAD_WITH_FIXED_CPP_DEBUG
    cout<<"    Aeq_li=false"<<endl;
#endif
    data.neq = neq;
    const int nu = data.unknown.size();
    //cout<<"nu: "<<nu<<endl;
    //cout<<"neq: "<<neq<<endl;
    //cout<<"nc: "<<nc<<endl;
    //cout<<"    matrixR"<<endl;
    SparseMatrix<T> AeqTR,AeqTQ;
    AeqTR = data.AeqTQR.matrixR();
    // This shouldn't be necessary
    AeqTR.prune(0.0);
#ifdef MIN_QUAD_WITH_FIXED_CPP_DEBUG
    cout<<"    matrixQ"<<endl;
#endif
    // THIS IS ESSENTIALLY DENSE AND THIS IS BY FAR THE BOTTLENECK
    // http://forum.kde.org/viewtopic.php?f=74&t=117500
    AeqTQ = data.AeqTQR.matrixQ();
#ifdef MIN_QUAD_WITH_FIXED_CPP_DEBUG
    cout<<"    prune"<<endl;
    cout<<"      nnz: "<<AeqTQ.nonZeros()<<endl;
#endif
    // This shouldn't be necessary
    AeqTQ.prune(0.0);
    //cout<<"AeqTQ: "<<AeqTQ.rows()<<" "<<AeqTQ.cols()<<endl;
    //cout<<matlab_format(AeqTQ,"AeqTQ")<<endl;
    //cout<<"    perms"<<endl;
#ifdef MIN_QUAD_WITH_FIXED_CPP_DEBUG
    cout<<"      nnz: "<<AeqTQ.nonZeros()<<endl;
    cout<<"    perm"<<endl;
#endif
    SparseMatrix<double> I(neq,neq);
    I.setIdentity();
    data.AeqTE = data.AeqTQR.colsPermutation() * I;
    data.AeqTET = data.AeqTQR.colsPermutation().transpose() * I;
    assert(AeqTR.rows() == neq);
    assert(AeqTQ.rows() == nu);
    assert(AeqTQ.cols() == nu);
    assert(AeqTR.cols() == neq);
    //cout<<"    slice"<<endl;
#ifdef MIN_QUAD_WITH_FIXED_CPP_DEBUG
    cout<<"    slice"<<endl;
#endif
    data.AeqTQ1 = AeqTQ.topLeftCorner(nu,nc);
    data.AeqTQ1T = data.AeqTQ1.transpose().eval();
    // ALREADY TRIM (Not 100% sure about this)
    data.AeqTR1 = AeqTR.topLeftCorner(nc,nc);
    data.AeqTR1T = data.AeqTR1.transpose().eval();
    //cout<<"AeqTR1T.size() "<<data.AeqTR1T.rows()<<" "<<data.AeqTR1T.cols()<<endl;
    // Null space
    data.AeqTQ2 = AeqTQ.bottomRightCorner(nu,nu-nc);
    data.AeqTQ2T = data.AeqTQ2.transpose().eval();
#ifdef MIN_QUAD_WITH_FIXED_CPP_DEBUG
    cout<<"    proj"<<endl;
#endif
    // Projected hessian
    SparseMatrix<T> QRAuu = data.AeqTQ2T * Auu * data.AeqTQ2;
    {
#ifdef MIN_QUAD_WITH_FIXED_CPP_DEBUG
      cout<<"    factorize"<<endl;
#endif
      // QRAuu should always be PD
      data.llt.compute(QRAuu);
      switch(data.llt.info())
      {
        case Eigen::Success:
          break;
        case Eigen::NumericalIssue:
          cerr<<"Error: Numerical issue."<<endl;
          return false;
        default:
          cerr<<"Error: Other."<<endl;
          return false;
      }
      data.solver_type = min_quad_with_fixed_data<T>::QR_LLT;
    }
#ifdef MIN_QUAD_WITH_FIXED_CPP_DEBUG
    cout<<"    smash"<<endl;
#endif
    // Known value multiplier
    SparseMatrix<T> Auk;
    slice(A,data.unknown,data.known,Auk);
    SparseMatrix<T> Aku;
    slice(A,data.known,data.unknown,Aku);
    SparseMatrix<T> AkuT = Aku.transpose();
    data.preY = Auk + AkuT;
    // Needed during solve
    data.Auu = Auu;
    slice(Aeq,data.known,2,data.Aeqk);
    assert(data.Aeqk.rows() == neq);
    assert(data.Aeqk.cols() == data.known.size());
  }
  return true;
}


template <
  typename T,
  typename DerivedB,
  typename DerivedY,
  typename DerivedBeq,
  typename DerivedZ,
  typename Derivedsol>
IGL_INLINE bool igl::min_quad_with_fixed_solve(
  const min_quad_with_fixed_data<T> & data,
  const Eigen::PlainObjectBase<DerivedB> & B,
  const Eigen::PlainObjectBase<DerivedY> & Y,
  const Eigen::PlainObjectBase<DerivedBeq> & Beq,
  Eigen::PlainObjectBase<DerivedZ> & Z,
  Eigen::PlainObjectBase<Derivedsol> & sol)
{
  using namespace std;
  using namespace Eigen;
  using namespace igl;
  // number of known rows
  int kr = data.known.size();
  if(kr!=0)
  {
    assert(kr == Y.rows());
  }
  // number of columns to solve
  int cols = Y.cols();
  assert(B.cols() == 1);
  assert(Beq.size() == 0 || Beq.cols() == 1);

  // resize output
  Z.resize(data.n,cols);
  // Set known values
  for(int i = 0;i < kr;i++)
  {
    for(int j = 0;j < cols;j++)
    {
      Z(data.known(i),j) = Y(i,j);
    }
  }

  if(data.Aeq_li)
  {

  // number of lagrange multipliers aka linear equality constraints
  int neq = data.lagrange.size();
  // append lagrange multiplier rhs's
  Eigen::Matrix<T,Eigen::Dynamic,1> BBeq(B.size() + Beq.size());
  BBeq << B, (Beq*-2.0);
  // Build right hand side
  Eigen::Matrix<T,Eigen::Dynamic,1> BBequl;
  igl::slice(BBeq,data.unknown_lagrange,BBequl);
  Eigen::Matrix<T,Eigen::Dynamic,Eigen::Dynamic> BBequlcols;
  igl::repmat(BBequl,1,cols,BBequlcols);
  Eigen::Matrix<T,Eigen::Dynamic,Eigen::Dynamic> NB;
  if(kr == 0)
  {
    NB = BBequlcols;
  }else
  {
    NB = data.preY * Y + BBequlcols;
  }

  //std::cout<<"NB=["<<std::endl<<NB<<std::endl<<"];"<<std::endl;
  //cout<<matlab_format(NB,"NB")<<endl;
  switch(data.solver_type)
  {
    case igl::min_quad_with_fixed_data<T>::LLT:
      sol = data.llt.solve(NB);
      break;
    case igl::min_quad_with_fixed_data<T>::LDLT:
      sol = data.ldlt.solve(NB);
      break;
    case igl::min_quad_with_fixed_data<T>::LU:
      // Not a bottleneck
      sol = data.lu.solve(NB);
      break;
    default:
      cerr<<"Error: invalid solver type"<<endl;
      return false;
  }
  //std::cout<<"sol=["<<std::endl<<sol<<std::endl<<"];"<<std::endl;
  // Now sol contains sol/-0.5
  sol *= -0.5;
  // Now sol contains solution
  // Place solution in Z
  for(int i = 0;i<(sol.rows()-neq);i++)
  {
    for(int j = 0;j<sol.cols();j++)
    {
      Z(data.unknown_lagrange(i),j) = sol(i,j);
    }
  }
  }else
  {
    assert(data.solver_type == min_quad_with_fixed_data<T>::QR_LLT);
    PlainObjectBase<DerivedBeq> eff_Beq;
    // Adjust Aeq rhs to include known parts
    eff_Beq = 
      //data.AeqTQR.colsPermutation().transpose() * (-data.Aeqk * Y + Beq);
      data.AeqTET * (-data.Aeqk * Y + Beq);
    // Where did this -0.5 come from? Probably the same place as above.
    PlainObjectBase<DerivedB> Bu;
    slice(B,data.unknown,Bu);
    PlainObjectBase<DerivedB> NB;
    NB = -0.5*(Bu + data.preY * Y);
    // Trim eff_Beq
    const int nc = data.AeqTQR.rank();
    const int neq = Beq.rows();
    eff_Beq = eff_Beq.topLeftCorner(nc,1).eval();
    data.AeqTR1T.template triangularView<Lower>().solveInPlace(eff_Beq);
    // Now eff_Beq = (data.AeqTR1T \ (data.AeqTET * (-data.Aeqk * Y + Beq)))
    PlainObjectBase<DerivedB> lambda_0;
    lambda_0 = data.AeqTQ1 * eff_Beq;
    //cout<<matlab_format(lambda_0,"lambda_0")<<endl;
    PlainObjectBase<DerivedB> QRB;
    QRB = -data.AeqTQ2T * (data.Auu * lambda_0) + data.AeqTQ2T * NB;
    PlainObjectBase<Derivedsol> lambda;
    lambda = data.llt.solve(QRB);
    // prepare output
    PlainObjectBase<Derivedsol> solu;
    solu = data.AeqTQ2 * lambda + lambda_0;
    //  http://www.math.uh.edu/~rohop/fall_06/Chapter3.pdf
    PlainObjectBase<Derivedsol> solLambda;
    {
      PlainObjectBase<Derivedsol> temp1,temp2;
      temp1 = (data.AeqTQ1T * NB - data.AeqTQ1T * data.Auu * solu);
      data.AeqTR1.template triangularView<Upper>().solveInPlace(temp1);
      //cout<<matlab_format(temp1,"temp1")<<endl;
      temp2 = PlainObjectBase<Derivedsol>::Zero(neq,1);
      temp2.topLeftCorner(nc,1) = temp1;
      //solLambda = data.AeqTQR.colsPermutation() * temp2;
      solLambda = data.AeqTE * temp2;
    }
    // sol is [Z(unknown);Lambda]
    assert(data.unknown.size() == solu.rows());
    assert(cols == solu.cols());
    assert(data.neq == neq);
    assert(data.neq == solLambda.rows());
    assert(cols == solLambda.cols());
    sol.resize(data.unknown.size()+data.neq,cols);
    sol.block(0,0,solu.rows(),solu.cols()) = solu;
    sol.block(solu.rows(),0,solLambda.rows(),solLambda.cols()) = solLambda;
    for(int u = 0;u<data.unknown.size();u++)
    {
      for(int j = 0;j<Z.cols();j++)
      {
        Z(data.unknown(u),j) = solu(u,j);
      }
    }
  }
  return true;
}

template <
  typename T,
  typename DerivedB,
  typename DerivedY,
  typename DerivedBeq,
  typename DerivedZ>
IGL_INLINE bool igl::min_quad_with_fixed_solve(
  const min_quad_with_fixed_data<T> & data,
  const Eigen::PlainObjectBase<DerivedB> & B,
  const Eigen::PlainObjectBase<DerivedY> & Y,
  const Eigen::PlainObjectBase<DerivedBeq> & Beq,
  Eigen::PlainObjectBase<DerivedZ> & Z)
{
  Eigen::PlainObjectBase<DerivedZ> sol;
  return min_quad_with_fixed_solve(data,B,Y,Beq,Z,sol);
}

#ifndef IGL_HEADER_ONLY
// Explicit template specialization
template bool igl::min_quad_with_fixed_solve<double, Eigen::Matrix<double, -1, 1, 0, -1, 1>, Eigen::Matrix<double, -1, 1, 0, -1, 1>, Eigen::Matrix<double, -1, 1, 0, -1, 1>, Eigen::Matrix<double, -1, 1, 0, -1, 1> >(igl::min_quad_with_fixed_data<double> const&, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1, 0, -1, 1> > const&, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1, 0, -1, 1> > const&, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1, 0, -1, 1> > const&, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1, 0, -1, 1> >&);
template bool igl::min_quad_with_fixed_precompute<double, Eigen::Matrix<int, -1, 1, 0, -1, 1> >(Eigen::SparseMatrix<double, 0, int> const&, Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1, 0, -1, 1> > const&, Eigen::SparseMatrix<double, 0, int> const&, bool, igl::min_quad_with_fixed_data<double>&);
template bool igl::min_quad_with_fixed_solve<double, Eigen::Matrix<double, -1, 1, 0, -1, 1>, Eigen::Matrix<double, -1, -1, 0, -1, -1>, Eigen::Matrix<double, -1, 1, 0, -1, 1>, Eigen::Matrix<double, -1, -1, 0, -1, -1> >(igl::min_quad_with_fixed_data<double> const&, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1, 0, -1, 1> > const&, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1, 0, -1, -1> > const&, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1, 0, -1, 1> > const&, Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1, 0, -1, -1> >&);
#endif