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- import numpy as np
- from matplotlib import pyplot as plt
- from abc import ABC, abstractproperty
- from nabirds import utils
- class BasePartCollection(ABC):
- def __getitem__(self, i):
- return self._parts[i]
- def __repr__(self):
- return repr(np.stack([p.as_annotation for p in self._parts]))
- @property
- def selected(self):
- return np.array([p.is_visible for p in self._parts], dtype=bool)
- @property
- def selected_idxs(self):
- return np.where(self.selected)[0]
- def select(self, idxs):
- if isinstance(idxs, np.ndarray) and idxs.dtype == bool:
- # a mask is present, so convert it to indeces
- idxs = np.where(idxs)[0]
- for p in self._parts:
- p.is_visible = p._id in idxs
- def hide_outside_bb(self, *bounding_box):
- for p in self._parts:
- p.hide_if_outside(*bounding_box)
- def invert_selection(self):
- self.select(np.logical_not(self.selected))
- def offset(self, dx, dy):
- for p in self._parts:
- p.x += dx
- p.y += dy
- def visible_locs(self):
- vis = [(p._id, p.xy) for p in self._parts if p.is_visible]
- idxs, xy = zip(*vis)
- return np.array(idxs), np.array(xy).T
- def visible_crops(self, *args, **kwargs):
- return np.array([p.crop(*args, **kwargs) for p in self._parts])
- def plot(self, cmap=plt.cm.jet, **kwargs):
- for i, p in enumerate(self._parts):
- p.plot(color=cmap(i/len(self._parts)), **kwargs)
- def reveal(self, im, ratio, *args, **kwargs):
- res = np.zeros_like(im)
- for part in self._parts:
- if not part.is_visible: continue
- x, y, crop = part.reveal(im, ratio=ratio, *args, **kwargs)
- h, w, _ = crop.shape
- res[y:y+h, x:x+w] = crop
- return res
- class BasePart(ABC):
- def __repr__(self):
- return repr(self.as_annotation)
- @staticmethod
- def new(image, annotation, rescale_size=-1):
- from .annotation import BBoxPart, LocationPart
- if len(annotation) == 4:
- return LocationPart(image, annotation, rescale_size)
- elif len(annotation) == 5:
- return BBoxPart(image, annotation, rescale_size)
- else:
- raise ValueError("Unknown part annotation format: {}".format(annotation))
- def rescale(self, image, annotation, rescale_size):
- if rescale_size is not None and rescale_size > 0:
- h, w, c = utils.dimensions(image)
- scale = np.array([w, h]) / rescale_size
- xy = annotation[1:3]
- xy = xy * scale
- annotation[1:3] = xy
- return annotation
- @property
- def is_visible(self):
- return self._is_visible
- @is_visible.setter
- def is_visible(self, value):
- self._is_visible = bool(value)
- @property
- def xy(self):
- return np.array([self.x, self.y])
- def crop(self, im, w, h, padding_mode="edge", is_location=True):
- if not self.is_visible:
- _, _, c = utils.dimensions(im)
- return np.zeros((h, w, c), dtype=np.uint8)
- x, y = self.xy
- pad_h, pad_w = h // 2, w // 2
- padded_im = np.pad(im, [(pad_h, pad_h), (pad_w, pad_w), [0,0]], mode=padding_mode)
- x0, y0 = x + pad_w, y + pad_h
- if is_location:
- x0, y0 = x0 - w // 2, y0 - h // 2
- return padded_im[y0:y0+h, x0:x0+w]
- @abstractproperty
- def middle(self):
- raise NotImplementedError
- def plot(self, **kwargs):
- return
- def hide_if_outside(self, x, y, w, h):
- mid_x, mid_y = self.middle
- self.is_visible = ((x <= mid_x <= x+w) and (y <= mid_y <= y+h))
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