camera-trap-anomaly-detection/py/Session.py

from datetime import datetime, timedelta
import pickle
import random
import subprocess
from warnings import warn
import os
from tqdm import tqdm
import matplotlib.image as mpimg
from skimage import transform, io
import IPython.display as display

from py.FileUtils import list_folders, list_jpegs_recursive, verify_expected_subfolders
from py.ImageUtils import display_images, get_image_date

class Session:
    def __init__(self, folder: str):
        self.folder = folder
        # session name = folder name[33:], the first 33 characters are always the same
        self.name = os.path.basename(folder)[33:]
        print(f"Session '{self.name}' at folder: {self.folder}")
        assert self.name != ""
        verify_expected_subfolders(self.folder)
        self.scanned = False
        # maps lapse files to their exif dates (for statistic and prediction purposes)
        self.lapse_dates = {}
        # maps motion files to their exif dates (for statistic purposes)
        self.motion_dates = {}
        # maps exif dates to lapse files (for prediction purposes)
        self.lapse_map = {}
        # maps exif dates to motion files (for csv mapping purposes, generated on demand)
        self.motion_map = None
        self.load_scans()
        if not self.scanned:
            print("Session not scanned. Run session.scan() to create scan files")
    
    def load_scans(self):
        lapse_dates_file = os.path.join("session_scans", self.name, "lapse_dates.pickle")
        motion_dates_file = os.path.join("session_scans", self.name, "motion_dates.pickle")
        lapse_map_file = os.path.join("session_scans", self.name, "lapse_map.pickle")
        lapse_dates_exists = os.path.isfile(lapse_dates_file)
        motion_dates_exists = os.path.isfile(motion_dates_file)
        lapse_map_exists = os.path.isfile(lapse_map_file)
        if lapse_dates_exists and motion_dates_exists and lapse_map_exists:
            with open(lapse_dates_file, "rb") as handle:
                self.lapse_dates = pickle.load(handle)
            with open(motion_dates_file, "rb") as handle:
                self.motion_dates = pickle.load(handle)
            with open(lapse_map_file, "rb") as handle:
                self.lapse_map = pickle.load(handle)
            self.scanned = True
            print("Loaded scans.")
        else:
            if not (not lapse_dates_exists and not motion_dates_exists and not lapse_map_exists):
                warn(f"Warning: Only partial scan data available. Not loading.")
            self.scanned = False
    
    def save_scans(self):
        os.makedirs(os.path.join("session_scans", self.name), exist_ok=True)
        lapse_dates_file = os.path.join("session_scans", self.name, "lapse_dates.pickle")
        motion_dates_file = os.path.join("session_scans", self.name, "motion_dates.pickle")
        lapse_map_file = os.path.join("session_scans", self.name, "lapse_map.pickle")
        with open(lapse_dates_file, "wb") as handle:
            pickle.dump(self.lapse_dates, handle, protocol=pickle.HIGHEST_PROTOCOL)
            print(f"Saved {lapse_dates_file}")
        with open(motion_dates_file, "wb") as handle:
            pickle.dump(self.motion_dates, handle, protocol=pickle.HIGHEST_PROTOCOL)
            print(f"Saved {motion_dates_file}")
        with open(lapse_map_file, "wb") as handle:
            pickle.dump(self.lapse_map, handle, protocol=pickle.HIGHEST_PROTOCOL)
            print(f"Saved {lapse_map_file}")
    
    def scan(self, force=False, auto_save=True):
        if self.scanned and not force:
            raise ValueError("Session is already scanned. Use force=True to scan anyway and override scan progress.")
        # Scan motion dates
        print("Scanning motion dates...")
        self.motion_dates = {}
        motion_folder = os.path.join(self.folder, "Motion")
        for file in tqdm(list_jpegs_recursive(motion_folder)):
            self.motion_dates[os.path.relpath(file, motion_folder)] = get_image_date(file)
        # Scan lapse dates
        print("Scanning lapse dates...")
        self.lapse_dates = {}
        lapse_folder = os.path.join(self.folder, "Lapse")
        for file in tqdm(list_jpegs_recursive(lapse_folder)):
            self.lapse_dates[os.path.relpath(file, lapse_folder)] = get_image_date(file)
        # Create lapse map
        print("Creating lapse map...")
        self.lapse_map = {}
        for file, date in self.lapse_dates.items():
            if date in self.lapse_map:
                self.lapse_map[date].append(file)
            else:
                self.lapse_map[date] = [file]
        self.scanned = True
        # Auto save
        if auto_save:
            print("Saving...")
            self.save_scans()
    
    def check_lapse_duplicates(self) -> bool:
        total = 0
        total_duplicates = 0
        total_multiples = 0
        deviant_duplicates = []
        for date, files in tqdm(self.lapse_map.items()):
            total += 1
            if len(files) > 1:
                total_duplicates += 1
                file_size = -1
                for f in files:
                    f_size = os.path.getsize(os.path.join(self.folder, "Lapse", f))
                    if file_size == -1:
                        file_size = f_size
                    elif f_size != file_size:
                        deviant_duplicates.append(date)
                        break
                if len(files) > 2:
                    total_multiples += 1
        deviant_duplicates.sort()
        print(f"* {total} lapse dates")
        print(f"* {total_duplicates} duplicates")
        print(f"* {total_multiples} multiples (more than two files per date)")
        print(f"* {len(deviant_duplicates)} deviant duplicates: {deviant_duplicates}")
        return total, total_duplicates, total_multiples, deviant_duplicates
    
    def open_images_for_date(self, date: datetime):
        img_names = self.lapse_map.get(date, [])
        if len(img_names) == 0:
            warn("No images for this date!")
        for i, img_name in enumerate(img_names):
            full_path = os.path.join(self.folder, "Lapse", img_name)
            print(f"#{i+1} {full_path}")
            subprocess.call(("xdg-open", full_path))

    def get_motion_image_from_filename(self, filename: str) -> "MotionImage":
        if filename in self.motion_dates:
            return MotionImage(self, filename, self.motion_dates[filename])
        else:
            raise ValueError(f"Unknown motion file name: {filename}")
    
    def __generate_motion_map(self):
        if self.motion_map is not None:
            return
        print("Generating motion map...")
        self.motion_map = {}
        for filename, date in self.motion_dates.items():
            if date in self.motion_map:
                self.motion_map[date].append(filename)
            else:
                self.motion_map[date] = [filename]
    
    def get_motion_images_from_date(self, date: datetime):
        self.__generate_motion_map()
        filenames = self.motion_map.get(date, [])
        return [MotionImage(self, filename, date) for filename in filenames]
    
    def get_random_motion_image(self, day_only=False, night_only=False) -> "MotionImage":
        if len(self.motion_dates) == 0:
            raise ValueError("No motion images in session!")
        img = None
        while img is None or (day_only and img.is_nighttime()) or (night_only and img.is_daytime()):
            filename = random.choice(list(self.motion_dates.keys()))
            img = MotionImage(self, filename, self.motion_dates[filename])
        return img
    
    def get_closest_lapse_images(self, motion_file: str):
        date: datetime = self.motion_dates[motion_file]
        previous_date = date.replace(minute=0, second=0)
        next_date = previous_date + timedelta(hours=1)
        while not previous_date in self.lapse_map:
            previous_date -= timedelta(hours=1)
        while not next_date in self.lapse_map:
            next_date += timedelta(hours=1)
        if len(self.lapse_map[previous_date]) > 1:
            warn(f"There are multiple lapse images for date {previous_date}! Choosing the first one.")
        if len(self.lapse_map[next_date]) > 1:
            warn(f"There are multiple lapse images for date {next_date}! Choosing the first one.")
        return LapseImage(self, self.lapse_map[previous_date][0], previous_date), LapseImage(self, self.lapse_map[next_date][0], next_date)

class SessionImage:
    def __init__(self, session: Session, subfolder: str, filename: str, date: datetime):
        self.session = session
        self.subfolder = subfolder
        self.filename = filename
        self.date = date
        if not os.path.isfile(self.get_full_path()):
            raise ValueError(f"File {subfolder}/{filename} in session folder {session.folder} not found!")
    
    def get_full_path(self) -> str:
        return os.path.join(self.session.folder, self.subfolder, self.filename)
    
    def open(self):
        full_path = self.get_full_path()
        print(f"Opening {full_path}...")
        subprocess.call(("xdg-open", full_path))

    def read(self, truncate_y = (40, 40), scale=1, gray=True):
        full_path = self.get_full_path()
        img = io.imread(full_path, as_gray=gray)
        # truncate
        if truncate_y is not None:
            if truncate_y[0] > 0 and truncate_y[1] > 0:
                img = img[truncate_y[0]:(-truncate_y[1]),:]
            elif truncate_y[0] > 0:
                img = img[truncate_y[0]:,:]
            elif truncate_y[1] > 0:
                img = img[:(-truncate_y[1]),:]
        # scale
        if scale is not None and scale < 1:
            img = transform.rescale(img, scale, multichannel=not gray)
        return img

    def is_daytime(self):
        return 6 <= self.date.hour <= 18
    
    def is_nighttime(self):
        return not self.is_daytime()
    
    def to_ipython_image(self, width=500, height=None):
        return display.Image(filename=self.get_full_path(), width=width, height=height)

class MotionImage(SessionImage):
    def __init__(self, session: Session, filename: str, date: datetime):
        super().__init__(session, "Motion", filename, date)
        if not self.filename in session.motion_dates:
            raise ValueError(f"File name {filename} not in session!")

    def get_closest_lapse_images(self):
        before, after = self.session.get_closest_lapse_images(self.filename)
        # rel = 0 if motion image was taken at before lapse image, rel = 1 if motion image was taken at after lapse image
        rel = (self.date - before.date).total_seconds() / (after.date - before.date).total_seconds()
        return before, after, rel
        
class LapseImage(SessionImage):
    def __init__(self, session: Session, filename: str, date: datetime):
        super().__init__(session, "Lapse", filename, date)
        if not self.filename in session.lapse_dates:
            raise ValueError(f"File name {filename} not in session!")